PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa012080
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 222aa    MW: 24063.2 Da    PI: 5.3742
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S29957616PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-50735PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-184797155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               + y+GVr ++ +g+Wv+eIr p++   + r++lg+f tae+Aa+a++ a+ +++g
  Lsa012080 47 PVYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTFSTAEMAARAHDVAAMSIKG 97
               68*****998.**********843...6**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-124797IPR001471AP2/ERF domain
SMARTSM003801.6E-3748111IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-2148105IPR016177DNA-binding domain
PROSITE profilePS5103222.98548105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-3248106IPR001471AP2/ERF domain
CDDcd000181.18E-3149107No hitNo description
PRINTSPR003676.4E-114960IPR001471AP2/ERF domain
PRINTSPR003676.4E-117187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAALPQTPEP DTPSSSSESA SLHKGVEAPA ASKMKKRSRK DVSYKHPVYR GVRMRSWGKW  60
VSEIRQPRKK SRIWLGTFST AEMAARAHDV AAMSIKGNSA VLNFPELKDS LPRPVSLSPR  120
DVQEAAAKGA TMLEFTSSGT PAPPLRPPPG DGSNPADELG EIIELPSLEG CLDSPESSTG  180
LVMVDLVDRW MYPSWAVADI DGFLDFISDQ VAENGSSNLI WD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1940106673Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023734295.11e-161dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD33e-54DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2J6KEC91e-159A0A2J6KEC9_LACSA; Uncharacterized protein
STRINGXP_009367456.12e-58(Pyrus x bretschneideri)
STRINGSolyc06g066540.1.12e-58(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-56ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]