PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa012107

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

LBD

Protein Properties

Length: 188aa MW: 20666.2 Da PI: 5.1583

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58673790	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.6	6.9e-41	30	129	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca+ Cvlap+fp ++p kf ++h++FG sn++k+l++lpe++r da+ss+vyeA+ar+rdP yG++g i++lq+q+++l+a+la++++e Lsa012107 30 PCAACKILRRRCAETCVLAPHFPPDEPLKFIMAHRVFGSSNIIKFLQELPESQRGDAVSSMVYEANARIRDPAYGSAGAIFQLQNQVNELQAQLAKAQAE 129 7***********************************************************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.953	29	130	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-40	30	127	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MASHHANDTL QPKLSSPSTS SLPMSVVVTP CAACKILRRR CAETCVLAPH FPPDEPLKFI 60 MAHRVFGSSN IIKFLQELPE SQRGDAVSSM VYEANARIRD PAYGSAGAIF QLQNQVNELQ 120 AQLAKAQAEV FNIQCQYAAL FCIETGQSPQ SSSHQSFDGF VTGSDESFQS SNLSFYLDQD 180 SLWDTIWA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-40	30	135	11	116	LOB family transfactor Ramosa2.1
5ly0_B	8e-40	30	135	11	116	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023733693.1	1e-138	LOB domain-containing protein 1-like
Swissprot	Q9LQR0	3e-63	LBD1_ARATH; LOB domain-containing protein 1
Swissprot	Q9SK08	8e-63	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A2J6MCK7	1e-119	A0A2J6MCK7_LACSA; Uncharacterized protein
STRING	XP_006488170.1	6e-74	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	4e-56	LOB domain-containing protein 11