PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa012157
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family TALE
Protein Properties Length: 441aa    MW: 49862 Da    PI: 6.4601
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58695016PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-14866PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.8e-093654031854
                HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                +F++  ++yp+ +e++ LA k gLt +qV++WF N R +
  Lsa012157 365 MFQNflHPYPKDAEKQLLAVKSGLTRSQVSNWFINARVR 403
                5887779******************************88 PP
2BELL75.48.7e-25242308471
       BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                 +++kk +Ll lle+Vd+rY+q+ ++++tvis+F+av++l++ ++++ +Al++i++ +++L+++i++ 
  Lsa012157 242 SVEAKKKHLLALLEMVDERYNQCLDEIHTVISAFHAVTELNP-QVHACFALHTITFFYKSLRERISNY 308
                6799**************************************.**********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.3E-18175307IPR006563POX domain
PfamPF075262.8E-21186306IPR006563POX domain
PROSITE profilePS5007111.272344407IPR001356Homeobox domain
SMARTSM003895.3E-7347411IPR001356Homeobox domain
CDDcd000864.71E-12347408No hitNo description
SuperFamilySSF466891.41E-15348415IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-26350413IPR009057Homeodomain-like
PfamPF059203.0E-15364403IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MGMAGGCESF IVPDESFQKA FVYQNHHMMP GNGFPINATE ISNPTDSFPS IGHMDIPISA  60
TALAALLASR HGQHETSSLP SFGIPNSMPY NGSENFVYDG MIGVGDMNRK WEYNTTTNSV  120
GLDGNELSLS LATCSGISNL SLQGRQLGSL EQASSCNSRS LSLGFDSNSI TDKPLQVLQC  180
SSGSNGYLHT MQQILTEIAT YSLGNLDPVS YKPMIAPDEF SDGNNKYEYD DHRFVHAFKG  240
RSVEAKKKHL LALLEMVDER YNQCLDEIHT VISAFHAVTE LNPQVHACFA LHTITFFYKS  300
LRERISNYIL SMGADFSTMD QGEDELSSFV PKQWALQQLR RKDHQLWRPQ RGLPEKSVSV  360
LRAWMFQNFL HPYPKDAEKQ LLAVKSGLTR SQVSNWFINA RVRLWKPMIE EMYLEMNRRR  420
RSDEETASNN NHRNQQYEYH S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A5e-15353410158Homeobox protein Meis1
4xrs_B5e-15353410158Homeobox protein Meis1
5bng_A5e-15353411159Homeobox protein Meis2
5bng_B5e-15353411159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023768684.10.0homeobox protein ATH1
RefseqXP_023768685.10.0homeobox protein ATH1
RefseqXP_023768686.10.0homeobox protein ATH1
SwissprotP487316e-97ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A2J6L3F30.0A0A2J6L3F3_LACSA; Uncharacterized protein
STRINGVIT_04s0008g00880.t011e-121(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.12e-92homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]