PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa012255

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Dof

Protein Properties

Length: 356aa MW: 38682.8 Da PI: 7.4998

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58684311	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.8	6.4e-40	38	99	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCds ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss Lsa012255 38 PEDALKCPRCDSGNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 99 57899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-32	27	96	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-33	40	96	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.394	42	96	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	44	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MDVSGVHHHY QQQEMSSHML DSMLVCTKAQ QDKKPKPPED ALKCPRCDSG NTKFCYYNNY 60 SLTQPRYFCK SCRRYWTKGG TLRNVPVGGG CRKNKRSSSS SSSATSPISS SASALSKIRG 120 PQDHHLNIQQ HHQHPLNIIT SSNSNNHLLS SGLGHLPYDS TDLSLAFARL QGQANTHLGF 180 DQFDQNDPTS NHNLGFLDAI RGGFLENMHT SNGFHNVLYS GGNLGNGEMG SVGNLIMGLN 240 NGTRNHDQDQ EIMNPMFHDH QQHMMNNGST CSATTAVTMT TVKQEACNMM KSSEFGESRP 300 GGGGGGVLWG FPWQIGGGGG DQGNMAHDVE SGRSQIGGWN GISSTAWHGL IDSPLM

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MDVSGVHHHY QQQEMSSHML DSMLVCTKAQ QDKKPKPPED ALKCPRCDSG NTKFCYYNNY  60
SLTQPRYFCK SCRRYWTKGG TLRNVPVGGG CRKNKRSSSS SSSATSPISS SASALSKIRG  120
PQDHHLNIQQ HHQHPLNIIT SSNSNNHLLS SGLGHLPYDS TDLSLAFARL QGQANTHLGF  180
DQFDQNDPTS NHNLGFLDAI RGGFLENMHT SNGFHNVLYS GGNLGNGEMG SVGNLIMGLN  240
NGTRNHDQDQ EIMNPMFHDH QQHMMNNGST CSATTAVTMT TVKQEACNMM KSSEFGESRP  300
GGGGGGVLWG FPWQIGGGGG DQGNMAHDVE SGRSQIGGWN GISSTAWHGL IDSPLM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023749062.1	0.0	dof zinc finger protein DOF3.2-like
TrEMBL	A0A2J6JH85	0.0	A0A2J6JH85_LACSA; Uncharacterized protein
STRING	XP_009622795.1	8e-90	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-39	TARGET OF MONOPTEROS 6