PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa012294
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family B3
Protein Properties Length: 334aa    MW: 38031.5 Da    PI: 8.5347
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58688090PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-27714PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.44.5e-12241051198
                HHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3  11 lksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                ++ + l+lp  f++++ +k   +k  +l++ +g  sW++k+  ++ ++ y ++ GW++ +++ +L ++D++vF l++  +f++ v++f+
  Lsa012294  24 SSPH-LSLPIAFVRRYLHK--IPKNTILKTATGeHSWRLKI--KQIGEDYCFAHGWEKLAQDVQLATRDILVFWLVD--SFTFQVSFFD 105
                4455.9**********655..55567888877769******..99999**************************976..7888999987 PP
2B355.69.8e-181532281490
                T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
         B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  + lpkkf+++ g+++++   ++++d++g++W++ l+++ +s+  ++l++GW +F + ++L+ gD+++Fk++++++ 
  Lsa012294 153 YYMGLPKKFVDSAGLENKS--SIKMKDKEGKEWKIGLKVEIYSNIrVYLASGWPHFRQYHDLCNGDMCLFKYIKKENV 228
                4589******999998666..6***************997777766**************************986554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-1510109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-1711109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.10913107IPR003340B3 DNA binding domain
CDDcd100171.10E-1114105No hitNo description
SMARTSM010195.7E-1116107IPR003340B3 DNA binding domain
PfamPF023628.5E-1026105IPR003340B3 DNA binding domain
PROSITE profilePS5086313.183140238IPR003340B3 DNA binding domain
SuperFamilySSF1019361.41E-15140231IPR015300DNA-binding pseudobarrel domain
CDDcd100174.15E-14141231No hitNo description
Gene3DG3DSA:2.40.330.108.1E-17141230IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.1E-9142235IPR003340B3 DNA binding domain
PfamPF023623.3E-14152228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDTDRSSEPK QGSPSFFKVV RYPSSPHLSL PIAFVRRYLH KIPKNTILKT ATGEHSWRLK  60
IKQIGEDYCF AHGWEKLAQD VQLATRDILV FWLVDSFTFQ VSFFDEHGCE KDLPLTHTSE  120
DDEDDGQHHD DDDVAPYEDL YFQKVICERN HKYYMGLPKK FVDSAGLENK SSIKMKDKEG  180
KEWKIGLKVE IYSNIRVYLA SGWPHFRQYH DLCNGDMCLF KYIKKENVLI LVEMIKSKRP  240
IKRQSPDVKG LNRKIGRPPV EKLDGGGGVK VKVEYESGPE AEVVKRKRGR SPGERQLGGG  300
VEVKIEDGLW PEVGVLKKKR GAPPLGEPCG GGGD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023743181.10.0B3 domain-containing protein REM5-like
RefseqXP_023743182.10.0B3 domain-containing protein REM5-like
TrEMBLA0A2J6JUZ90.0A0A2J6JUZ9_LACSA; Uncharacterized protein