PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa012404
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family TALE
Protein Properties Length: 366aa    MW: 40961.3 Da    PI: 6.5542
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58692206PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-31452PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-092953292155
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                k +yps++++  LA+++gL+++q+ +WF N+R ++
  Lsa012404 295 KWPYPSEAQKLALAESTGLDQKQINNWFINQRKRH 329
                569*****************************885 PP
2ELK41.13.7e-14249270122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELK qLlrKYsgyLgsLkqEF+
  Lsa012404 249 ELKGQLLRKYSGYLGSLKQEFM 270
                9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.3E-2091135IPR005540KNOX1
PfamPF037903.2E-2294132IPR005540KNOX1
SMARTSM012561.8E-22161212IPR005541KNOX2
PfamPF037911.6E-20165210IPR005541KNOX2
SMARTSM011882.8E-8249270IPR005539ELK domain
PROSITE profilePS5121311.174249269IPR005539ELK domain
PfamPF037896.1E-11249270IPR005539ELK domain
PROSITE profilePS5007112.908269332IPR001356Homeobox domain
SMARTSM003896.0E-13271336IPR001356Homeobox domain
SuperFamilySSF466891.07E-19271347IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-28274334IPR009057Homeodomain-like
CDDcd000861.29E-12281333No hitNo description
PfamPF059205.2E-17289328IPR008422Homeobox KN domain
PROSITE patternPS000270307330IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MYVLYSQFQP YSINLFLVVN VGALCLPPPP VSYNNNNNNL IFADQDHHHH HHHHHHSTCG  60
TSTSAMMLEN SAININDGGE LAFMSSSSCS SSAKAKIMSH PHYPRLLSAY LNCQKIGAPP  120
EVVERLEDAC RASVVAAMSS RSGSAGCEAG TSDGGGGGGM NMMIIGQDPA LDQFMEAYCE  180
MLIKYEQELA KPFKEAMLFL SRVESQFKAI SISTSDSAGG EVGMDKNGSS EEEVDVNNNL  240
IDPQAEDQEL KGQLLRKYSG YLGSLKQEFM KKRKKGKLPK EARQQLLDWW TRHYKWPYPS  300
EAQKLALAES TGLDQKQINN WFINQRKRHW KPSEDMQFVV MDAAHPHHYF MENILGNPYP  360
MDVSLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264273LKQEFMKKRK
2270274KKRKK
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023742828.10.0homeobox protein SHOOT MERISTEMLESS-like isoform X3
RefseqXP_023742829.10.0homeobox protein SHOOT MERISTEMLESS-like isoform X3
RefseqXP_023742830.10.0homeobox protein SHOOT MERISTEMLESS-like isoform X3
RefseqXP_023742831.10.0homeobox protein SHOOT MERISTEMLESS-like isoform X3
RefseqXP_023742832.10.0homeobox protein SHOOT MERISTEMLESS-like isoform X3
SwissprotP466081e-133HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A251SA930.0A0A251SA93_HELAN; Putative ELK domain, KNOX1, KNOX2, Homeodomain-like protein
TrEMBLA0A2J6JVM30.0A0A2J6JVM3_LACSA; Uncharacterized protein
STRINGVIT_10s0116g00190.t011e-145(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-128KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]