PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa012494
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C2H2
Protein Properties Length: 247aa    MW: 26958.7 Da    PI: 6.5065
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58679542PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001784106123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C  C + F++   L  H+++H
  Lsa012494  84 YTCAFCRREFRSAQALGGHMNVH 106
                9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.38E-681111No hitNo description
PROSITE profilePS5015711.01184111IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAPDXPDLAL LSLTYLQELS KSTHQPTINP STSTTTTTSS GVLWMWDPNQ PAANSQEKDD  60
SWEVRAFAED TGNIMGTTWP PRSYTCAFCR REFRSAQALG GHMNVHRRDR ARLHQAQPNL  120
KNPYITSSIS SSSSSTLLIP TQDFDGNGGL CLLYSLPNPN TIFSPIKTFN DSTSSRLPIA  180
PHPTTANLMN FPVAVLPDNI KSSLSNSSNT LGSMSTSNNN NHLLLTNSAV EELDLELRLG  240
RSSTSPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-1379106229superman protein
2l1o_A1e-1379106229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023759098.11e-148transcriptional regulator SUPERMAN-like
TrEMBLA0A2J6LNW41e-121A0A2J6LNW4_LACSA; Uncharacterized protein
STRINGEOY240172e-69(Theobroma cacao)
STRINGPOPTR_0003s09000.12e-69(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.17e-37C2H2 family protein