PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa012509
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 191aa    MW: 21185.1 Da    PI: 6.0148
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58671484PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY924.5e-29102160259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +D ++WrKYGqK++kgs+fpr+YY+C+++  C ++k+ve+s+ dp+v+++ Y+geH h+
  Lsa012509 102 SDTWAWRKYGQKPIKGSPFPRNYYKCSTTkACGARKQVEQSHVDPTVFIVSYSGEHMHP 160
                7*************************99889***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-2987162IPR003657WRKY domain
SuperFamilySSF1182901.28E-2496162IPR003657WRKY domain
PROSITE profilePS5081130.50396162IPR003657WRKY domain
SMARTSM007743.1E-31101161IPR003657WRKY domain
PfamPF031061.0E-24103160IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
XNTTTSDDGF DMVETVASGN EIYQFSYSNT GENQSEGLEE VYKEGCSQRL GTTATAVVSG  60
DDEQLPVFDG SCDSFSNETP SRKRKNQQKK VVVELTQEEL CSDTWAWRKY GQKPIKGSPF  120
PRNYYKCSTT KACGARKQVE QSHVDPTVFI VSYSGEHMHP RPTHRSPLAG STRSNKSTMA  180
HLPPPISDDC P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-1893162877Probable WRKY transcription factor 4
2lex_A1e-1893162877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023728918.11e-142probable WRKY transcription factor 27 isoform X1
SwissprotQ9FLX83e-47WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBLA0A2J6ME011e-133A0A2J6ME01_LACSA; Uncharacterized protein
STRINGA0A087GAI16e-47(Arabis alpina)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mukhtar MS,Liu X,Somssich IE
    Elucidating the role of WRKY27 in male sterility in Arabidopsis.
    Plant Signal Behav, 2017. 12(9): p. e1363945
    [PMID:28816593]