PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa012538
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C2H2
Protein Properties Length: 360aa    MW: 39862.4 Da    PI: 7.3535
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58683617PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-054262323
               ETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
               C++C+k+Fs+   L  H+r+H
  Lsa012538 42 CKICNKVFSNGRALGGHMRSH 62
               ********************9 PP
2zf-C2H2110.0013224246123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C+ C+k+F +   L  H  +H
  Lsa012538 224 YQCETCDKVFDSFQALGGHKTSH 246
                9*********9988887777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0534062IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.0144067IPR007087Zinc finger, C2H2
SuperFamilySSF576674.48E-84162No hitNo description
PfamPF139121.2E-74262IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
SuperFamilySSF576674.48E-8219246No hitNo description
SMARTSM003550.055224246IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.577224246IPR007087Zinc finger, C2H2
PfamPF139121.2E-10224248IPR007087Zinc finger, C2H2
PROSITE patternPS000280226246IPR007087Zinc finger, C2H2
SMARTSM003550.44274296IPR015880Zinc finger, C2H2-like
PfamPF139124.0E-12274296IPR007087Zinc finger, C2H2
PROSITE profilePS501578.995274296IPR007087Zinc finger, C2H2
PROSITE patternPS000280276296IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
ISCYTARERN KDRTSVPVQR ETAHTYYTHT ACRISSMEGR MCKICNKVFS NGRALGGHMR  60
SHLVTLPIPW KKPIHALQLS SRTTTDSTTS ASLSCDHSED DEDQEKILMY GLRENPKRSF  120
RVADPEFMDH GGSGFVLQED RESETEVNRK MNPTRKRSKR ARVTRSVKEP SLSTDLEPVI  180
MSSVSDHINS AEEDVALCLM MLSRDVLSFI NSGESNPSQN RSKYQCETCD KVFDSFQALG  240
GHKTSHRKID NDFAFSGGGN KSRKNVAQDD GKLHECPYCY RVFGSGQALG GHKRSHVLGS  300
STTTASDSFG GKGDASVNLV NSTKAQGNLV IIDLNLPAPT EDEENSAVSD AEFYQSPLHL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023744694.10.0zinc finger protein ZAT1-like
TrEMBLA0A2J6JRP40.0A0A2J6JRP4_LACSA; Uncharacterized protein
STRINGXP_010258927.13e-70(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-46C2H2-like zinc finger protein