PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa012539
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family G2-like
Protein Properties Length: 305aa    MW: 34254.1 Da    PI: 6.1906
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58682451PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.26.7e-322074155
    G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
               kprl+Wt+eLH+rFv+ v+qLGG+ekAtPk+++++m+++gLtl+h+kSHLQkYRl
  Lsa012539 20 KPRLKWTSELHQRFVDSVSQLGGPEKATPKSLMRVMGIHGLTLYHLKSHLQKYRL 74
               79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.8821777IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-291874IPR009057Homeodomain-like
SuperFamilySSF466891.13E-141974IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-222075IPR006447Myb domain, plants
PfamPF002491.4E-62273IPR001005SANT/Myb domain
PfamPF143796.1E-24117162IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAHENIQNQE VNLVLSSDAK PRLKWTSELH QRFVDSVSQL GGPEKATPKS LMRVMGIHGL  60
TLYHLKSHLQ KYRLGKIQQS PACSGNIQEE FGDDHRSDIT SIDHNDENPN QISESLKIAE  120
ALQMQMEVQR KLHEQIEVQR HLQLRIEAQG KYLQSVLRKA QDTLAGYNSS AIEVEAAKAE  180
LSHLVSMVDN GCPSSLSMLT EVEDSRLKKE VKKTRNGSSM ESSLTSSESW GRKENDDLDL  240
KLMDRNGMGD SGNGRKRSGS TISDGNCQGK RLQKGSERFD LNSQYVNDFD FDFESKSSTL  300
DLNSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-181976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-181976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A9e-192076157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-192076157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-192076157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-192076157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-181976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-181976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-181976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-181976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-181976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-181976158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023732250.10.0myb family transcription factor PHL8-like
SwissprotF4I2744e-75PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A2J6MCX10.0A0A2J6MCX1_LACSA; Uncharacterized protein
STRINGXP_008339891.11e-103(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.12e-77G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]