PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa012546

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Dof

Protein Properties

Length: 181aa MW: 19398.1 Da PI: 8.6005

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58667072	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.2	8.9e-39	28	86	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GGalr++PvGgg+rkn k+ Lsa012546 28 PEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGALRDIPVGGGTRKNAKR 86 57899***************************************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-28	24	85	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-33	30	85	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.357	31	85	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	33	69	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MPSDSSDQRR TTTAKNHQVG LGAPPSEPEH LPCPRCDSTN TKFCYYNNYN FSQPRHFCKS 60 CRRYWTHGGA LRDIPVGGGT RKNAKRARVS TATSHDNSSV SSGIEYHHIS ATSTTTATTS 120 VASVPILMSF AGDHGGSGNC GSFTSLLSNT QSPGLYGLDQ DLSFGLGRTI WPFSSIGDGV 180 X

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023730121.1	1e-131	dof zinc finger protein DOF3.4
Swissprot	Q39088	7e-44	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	A0A2J6KNQ2	1e-130	A0A2J6KNQ2_LACSA; Uncharacterized protein
STRING	Migut.H00486.1.p	5e-62	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	2e-44	OBF binding protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]