PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa012636

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Trihelix

Protein Properties

Length: 524aa MW: 61066.2 Da PI: 6.598

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58695180	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.4	1.6e-12	94	143	2	56
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwen 56 W+++ev +L++++++ e+++r+ W++vs+k++e g++rs+++Ckek+e+ Lsa012636 94 WSNDEVIQLLRIKSSSENWFRDL-----TWDHVSRKLAELGYKRSAQKCKEKFED 143 *******************97.....9**********************98 PP
2	trihelix	93.3	2.4e-29	391	491	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rW+++evlaLi++r+++++ l+ ++ + lWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpy++ Lsa012636 391 RWPRDEVLALINIRSNVNNGLGGNNedhqgyignngggggggVGGSLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDANKKR-SLDSRTCPYYH 489 8**************999997666778888999999999999***************************************8.9999***** PP trihelix 84 ql 85 ql Lsa012636 490 QL 491 *9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.7E-9	92	147	No hit	No description
PROSITE profile	PS50090	5.97	93	145	IPR017877	Myb-like domain
CDD	cd12203	1.72E-20	390	472	No hit	No description
Pfam	PF13837	1.3E-17	390	491	No hit	No description
PROSITE profile	PS50090	6.307	391	465	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence Send to blast
MFDGVPLEQF RQFISTPSSR IPTNSSLIQT TPISTPANLN FLSFDPLLFT PTLPTPHHHQ 60 SLFQSQHFLR TPTRDHYNDT EGKVDQEIDI NDSWSNDEVI QLLRIKSSSE NWFRDLTWDH 120 VSRKLAELGY KRSAQKCKEK FEDETCRSFG STIGYNKDSS RYLISEELDE HLYNNADQNT 180 HHDHITTESP EDLSYQENAQ VHEQRVEEQD LEVQGQKDHF IEDVSEIMMQ KSQDNVHVIN 240 SKKRKRKHKK FKMVKGLCVD LVKKMMAQQE EMHKKLLDDM RNREEEKIKR EEAWRKEETE 300 RVKREIHIRE HEQEMAKDRQ STITEFLNKI TSFDQKIQIP FDMNLQELQT NLSNINKQIP 360 LCEITKIPSS EKITENPHQN QSTSKDDIGK RWPRDEVLAL INIRSNVNNG LGGNNEDHQG 420 YIGNNGGGGG GGVGGSLWER ISQGMLELGY KRSAKRCKEK WENINKYFRK TKDANKKRSL 480 DSRTCPYYHQ LSILYNQEKQ ASNSVGLSFD DPEKCVIVEI TPEN

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence Send to blast

MFDGVPLEQF RQFISTPSSR IPTNSSLIQT TPISTPANLN FLSFDPLLFT PTLPTPHHHQ  60
SLFQSQHFLR TPTRDHYNDT EGKVDQEIDI NDSWSNDEVI QLLRIKSSSE NWFRDLTWDH  120
VSRKLAELGY KRSAQKCKEK FEDETCRSFG STIGYNKDSS RYLISEELDE HLYNNADQNT  180
HHDHITTESP EDLSYQENAQ VHEQRVEEQD LEVQGQKDHF IEDVSEIMMQ KSQDNVHVIN  240
SKKRKRKHKK FKMVKGLCVD LVKKMMAQQE EMHKKLLDDM RNREEEKIKR EEAWRKEETE  300
RVKREIHIRE HEQEMAKDRQ STITEFLNKI TSFDQKIQIP FDMNLQELQT NLSNINKQIP  360
LCEITKIPSS EKITENPHQN QSTSKDDIGK RWPRDEVLAL INIRSNVNNG LGGNNEDHQG  420
YIGNNGGGGG GGVGGSLWER ISQGMLELGY KRSAKRCKEK WENINKYFRK TKDANKKRSL  480
DSRTCPYYHQ LSILYNQEKQ ASNSVGLSFD DPEKCVIVEI TPEN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	241	246	KKRKRK
2	241	249	KKRKRKHKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023771582.1	0.0	trihelix transcription factor GTL2
TrEMBL	A0A2J6KWJ9	0.0	A0A2J6KWJ9_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	1e-61	Trihelix family protein