PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa012711
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 235aa    MW: 26493.9 Da    PI: 5.4695
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58679821PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.7e-1381127554
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +  rE++RRd++N++f+eL e+l +    +s+K +K+ iL  A++ + +L
  Lsa012711  81 KACREKKRRDKLNERFQELNEMLDPG---RSPKTDKSVILADAIRMVTQL 127
                678**********************9...9***************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.13E-1066129No hitNo description
PROSITE profilePS5088813.33876127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-1381151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-1081127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-1381149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-982133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVAPEEDDNS NCFFDFSLIE QFPVPGGELP SLDTDFQWSS DPFPDSANLS KEFVDSLGKS  60
NTTKEDESRK RAHPGSCSDS KACREKKRRD KLNERFQELN EMLDPGRSPK TDKSVILADA  120
IRMVTQLRND AAKLKDSSQD LLVKINELKV EKNELRDEKQ KLKSDKERLE QQLKAATTYC  180
GPPTAFYPPA HPVIPVSTPN KFMPFMGFQG VPMWQFASPN AVDTSKDHVL RSPLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16888RKRAHPGSCSDSKACREKKRR
28590KKRRDK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023758717.11e-174transcription factor bHLH115-like
SwissprotQ9C6824e-63BH115_ARATH; Transcription factor bHLH115
TrEMBLA0A2J6MGU81e-172A0A2J6MGU8_LACSA; Uncharacterized protein
STRINGXP_002518568.11e-78(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.12e-65bHLH family protein
Publications ? help Back to Top
  1. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]