PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa012776
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 222aa    MW: 25574.3 Da    PI: 5.4098
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58672127PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-19127177255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +gr+ AeIrdp+++g  +r++lg+++ta e aka+++a+ +++g
  Lsa012776 127 HYRGVRRRP-WGRYSAEIRDPCQRG--RRIWLGTYDTAIEGAKAYDRAAFNMRG 177
                69*******.***********8876..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.30E-29127185No hitNo description
SuperFamilySSF541712.62E-21127187IPR016177DNA-binding domain
SMARTSM003805.7E-32127191IPR001471AP2/ERF domain
PfamPF008476.3E-13127177IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-29127186IPR001471AP2/ERF domain
PROSITE profilePS5103223.406127185IPR001471AP2/ERF domain
PRINTSPR003676.8E-13128139IPR001471AP2/ERF domain
PRINTSPR003676.8E-13167187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
METPVEFSTL DLLRQHLLDE FEIPAPPPVD ALSNIELDDH FISDFDYLNW STTNASCDSS  60
TSWSSSSSVS NNLNSNEIIN NTPDDVCHFS VFDSINFSVF EFKPDVMETT VNPSMKMKKT  120
ERKDEGHYRG VRRRPWGRYS AEIRDPCQRG RRIWLGTYDT AIEGAKAYDR AAFNMRGRKA  180
ILNFPLEIEK NQREQDDAAD AVVNRNSRRK RSRHSVEVKT ET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-26127192570ATERF1
3gcc_A2e-26127192570ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117134KKTERKDEGHYRGVRRRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023750051.11e-166ethylene-responsive transcription factor 5-like
TrEMBLA0A2J6M8E11e-165A0A2J6M8E1_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.15e-33ethylene response factor 104