PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa012846

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

G2-like

Protein Properties

Length: 335aa MW: 38127.8 Da PI: 7.2662

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58685490	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-41949	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.3	5.4e-31	68	121	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rlrWtp+LH Fv+ave+LGG+e+AtPk +l+lm+++gL+++hvkSHLQ+YR+ Lsa012846 68 ARLRWTPDLHLTFVKAVERLGGQERATPKLVLQLMNIQGLSIAHVKSHLQMYRS 121 69***************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.076	64	124	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.1E-29	64	122	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.55E-14	67	122	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-22	68	123	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-9	69	120	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MIEKADSNGS KMNNHLSCRN IIGEDEVDDE NNTKSSQSSG NNSMVDQVEG EKKDESIRVR 60 PYVRSKMARL RWTPDLHLTF VKAVERLGGQ ERATPKLVLQ LMNIQGLSIA HVKSHLQMYR 120 SKKIDDQDQV INRGDYYAGS NSHLLHNLCQ LPGLDQRLFK VNLSQNSWSN HVISRPSTNN 180 MINARIEDHG LNHGRQGDFN MNTIMNYGAY YMRKKPSNED ENCKIACQEV EKDETLTNTR 240 SSLIDPEFMN SFVNTKKRKA PLDEGLDLNL SLSLKGSMTR DDDEVDSALC LSLLSSSSKK 300 EKYYKDYGME SSRNLLEEGQ LRKNPRMSST LDLTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-19	68	123	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-19	68	123	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-19	68	123	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	68	123	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	68	123	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	68	123	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-19	68	123	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-19	68	123	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-19	68	123	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-19	68	123	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-19	68	123	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-19	68	123	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023733960.1	0.0	two-component response regulator ORR24-like isoform X1
TrEMBL	A0A2J6KF59	0.0	A0A2J6KF59_LACSA; Uncharacterized protein