PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa012854
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 254aa    MW: 27103.6 Da    PI: 7.1637
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S32105965PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-6164PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.2e-09211253552
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                h+++Er RR+ri +++ + ++l+P+a      K +Ka++L + ++Y+k
  Lsa012854 211 HSIAERLRRERIAEKMKRYKKLVPNA-----NKTDKASMLDEIIDYVK 253
                99***********************8.....6**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-11204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.30E-9204253No hitNo description
PROSITE profilePS5088815.167206254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-10206253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6211253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSLQDLQNVT NSYDHTSSHE DFLEQMLCGL QSGVSWPEIS TGTGGGGGAG QNKPVFPWDV  60
DHFDDQSSFL ASKLRQHQIS AGTGGAGNPS SAVKSLLLQQ QWLLSRGLTG AGDSGLFEND  120
IIDASSFKSP SGDNSIQTLF NGFAGSLQSN QTQDFHFPPA QSFGSQGTTA SLTNQGPTSG  180
GVTAAGGGGS GPPTQPRQRV RARRGQTTDP HSIAERLRRE RIAEKMKRYK KLVPNANKTD  240
KASMLDEIID YVKX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215220RLRRER
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023733802.11e-149transcription factor bHLH66-like
TrEMBLA0A2J6KFP11e-148A0A2J6KFP1_LACSA; Uncharacterized protein
STRINGVIT_11s0037g00040.t015e-60(Vitis vinifera)
STRINGcassava4.1_007217m2e-60(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.17e-20LJRHL1-like 1