PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa012872
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 256aa    MW: 28700.8 Da    PI: 9.4818
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58678711PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.75.6e-1571124155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                ++ +hn+ Er RR+++N+ +e Lr++lP + + ++kK+s   i+ +Av+YI +Lq
  Lsa012872  71 KKLNHNASERDRRKKVNNLYESLRSVLPMS-NDRKKKVSIPGIVSRAVKYIPELQ 124
                6789*************************5.478888***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.22E-1561137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.22770123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-1471137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-1271124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.34E-1271128No hitNo description
SMARTSM003534.2E-1176129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MLALSSPLFS TPYGWPLADN FSKVCGDPDS TQSFLEFPSS DQIQLDFTPE NSSSFGGAVN  60
RGKGDGMNVV KKLNHNASER DRRKKVNNLY ESLRSVLPMS NDRKKKVSIP GIVSRAVKYI  120
PELQKEVETL LHKKEKLWSY SSSTENIYIK KQSAKDAIID EKSSIVSSVS VLSEKEAVIQ  180
LISSTKSSVK NKDIVFLSKV LEKLEEEEDG FILLNATTFK CVGEGMLLNT IHFQVQGNNK  240
IDAQKMKEKL RSFQQQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023730605.10.0transcription factor bHLH100-like isoform X2
TrEMBLA0A2J6KMM60.0A0A2J6KMM6_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.18e-32bHLH family protein