PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013029
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 368aa    MW: 39361.1 Da    PI: 5.2776
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-28981PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-1770115147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W++eEd +l ++v  +G ++W++Iar ++ gR++k+c++rw + 
        Lsa013029  70 KGPWSPEEDAILSRLVSNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 115
                      79******************************.***********985 PP
2Myb_DNA-binding56.75.5e-18122166147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T eEd +++ a++ +G++ W++Iar ++ gRt++ +k++w++ 
        Lsa013029 122 RKPFTDEEDRIILSAHAIHGNK-WASIARLLP-GRTDNAIKNHWNST 166
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.71265116IPR017930Myb domain
SuperFamilySSF466891.94E-3068163IPR009057Homeodomain-like
SMARTSM007177.1E-1569118IPR001005SANT/Myb domain
PfamPF002499.1E-1770115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-2771123IPR009057Homeodomain-like
CDDcd001672.73E-1472114No hitNo description
PROSITE profilePS5129426.149117171IPR017930Myb domain
SMARTSM007173.9E-17121169IPR001005SANT/Myb domain
PfamPF002491.5E-15122166IPR001005SANT/Myb domain
CDDcd001673.53E-13124167No hitNo description
Gene3DG3DSA:1.10.10.601.0E-23124170IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDKDQDQDQD AAKIEDFTAP QDDGGDVTTA ATENHDADDS DPVTVGDGVG ASGASGGGGR  60
AGKRTGDRVK GPWSPEEDAI LSRLVSNFGA RNWSLIARGI PGRSGKSCRL RWCNQLDPAV  120
KRKPFTDEED RIILSAHAIH GNKWASIARL LPGRTDNAIK NHWNSTLRRR GHELGKFNIG  180
SGNTIEDPSL ERSKASSEET LSCGDINSFK PHEGPDITSD PNNDQTTLFR PKPRVSAFNV  240
YNSQTGSETY GPTVLKGDFG ISKLLEGAYG ERLVPHQCGH GCCDPSGQSQ SQTEKSILGP  300
EFVDYVEPGS FSSHELAALA TDISNIAWLR SGLDNGPRPG DRLRAEVISS LPVSWQGSGQ  360
PANVGSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-40671704107B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023734833.10.0transcription factor MYB1-like
SwissprotQ425756e-94MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A2J6KD800.0A0A2J6KD80_LACSA; Uncharacterized protein
STRINGPGSC0003DMT4000523951e-135(Solanum tuberosum)
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]