PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa013034

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

LBD

Protein Properties

Length: 177aa MW: 19302.8 Da PI: 4.8789

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S32105735	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	79	8.1e-25	7	99	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+ ++ v+ pyf+ +q + +fa+vhk+FGasn +kll +lp ++r++a+ s++yeA ar+ PvyG+v+ i++l+qq++ l++e+++l Lsa013034 7 SCGACKFREE-----GVFTPYFCYSQgADHFAAVHKIFGASNASKLLMKLPLQDRSEAAISICYEALARV-HPVYGCVAQIFALEQQVAGLQEEIDQLS 99 6999999766.....9******9989*************************************8.5********************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.902	1	102	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.5E-23	7	98	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MTGASFSCGA CKFREEGVFT PYFCYSQGAD HFAAVHKIFG ASNASKLLMK LPLQDRSEAA 60 ISICYEALAR VHPVYGCVAQ IFALEQQVAG LQEEIDQLSN YMTYVSFGLP NCMTYVSSEI 120 NGTSISDHLN QQTPPLFAAP QASSPSLAIL DGQNSHSHSL LDHPLMESFE FHGELIT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-22	3	118	7	131	LOB family transfactor Ramosa2.1
5ly0_B	4e-22	3	118	7	131	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269\|PubMed:17259263}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631, ECO:0000269\|PubMed:17259263}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023737271.1	1e-121	LOB domain-containing protein 33-like
Swissprot	Q9M2J7	1e-34	LBD29_ARATH; LOB domain-containing protein 29
TrEMBL	A0A2J6K845	1e-120	A0A2J6K845_LACSA; Uncharacterized protein
STRING	XP_009351469.1	4e-45	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	4e-37	lateral organ boundaries-domain 29

Publications ? help Back to Top
Gupta A,Singh M,Laxmi A Interaction between glucose and brassinosteroid during the regulation of lateral root development in Arabidopsis. Plant Physiol., 2015. 168(1): p. 307-20 [PMID:25810094] Porco S, et al. Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3. Development, 2016. 143(18): p. 3340-9 [PMID:27578783] Lee K,Seo PJ High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis. Planta, 2017. 246(4): p. 797-802 [PMID:28766014] Xu C,Cao H,Xu E,Zhang S,Hu Y Genome-Wide Identification of Arabidopsis LBD29 Target Genes Reveals the Molecular Events behind Auxin-Induced Cell Reprogramming during Callus Formation. Plant Cell Physiol., 2018. 59(4): p. 744-755 [PMID:29121271] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]