PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa013049

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MYB

Protein Properties

Length: 246aa MW: 28358.6 Da PI: 8.4359

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58685571	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.2	3.2e-07	20	67	3	48
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 +WT e + a + + ++ +W+ +a+ ++ g+++ ++k+ + k++ Lsa013049 20 KWTNEQNTWFESALAIFDTDtpdRWSNVAALVP-GKSEIDVKNQYEKLK 67 8******************************.*********9986 PP
2	Myb_DNA-binding	43.4	7.8e-14	112	156	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + + +G+g+W++I+r + ++t+ q+ s+ qky Lsa013049 112 PWTEEEHRRFLVGLQVHGKGDWRSISRNFVMTKTPTQVASHAQKY 156 8***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.26	13	67	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.8E-4	16	66	IPR009057	Homeodomain-like
SMART	SM00717	9.4E-8	17	69	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.37E-10	19	70	IPR009057	Homeodomain-like
CDD	cd00167	1.00E-5	20	67	No hit	No description
PROSITE profile	PS51294	18.112	105	161	IPR017930	Myb domain
SuperFamily	SSF46689	4.09E-16	107	160	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-15	109	160	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	9.3E-11	109	156	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-10	109	159	IPR001005	SANT/Myb domain
Pfam	PF00249	9.3E-12	112	156	IPR001005	SANT/Myb domain
CDD	cd00167	1.07E-8	112	156	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
METLSLSSNT LSMQENKNTK WTNEQNTWFE SALAIFDTDT PDRWSNVAAL VPGKSEIDVK 60 NQYEKLKADI NEIEADMVPD PGYFTSSFED HSFSIFGKRP RSCDQERRKG VPWTEEEHRR 120 FLVGLQVHGK GDWRSISRNF VMTKTPTQVA SHAQKYYARQ HSDGKEKRRP SIHDITIINH 180 PDNSERSPPS INKPTGLPKD MLHWNNPSDE TVTSMAYPFE IAKMNKNVRV YNSGLRLQPT 240 RYQVQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	8e-15	21	87	11	77	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023748556.1	0.0	transcription factor DIVARICATA-like
Swissprot	Q8S9H7	2e-64	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A2J6JIE7	0.0	A0A2J6JIE7_LACSA; Uncharacterized protein
STRING	XP_009627320.1	5e-77	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	2e-70	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]