PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013065
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 322aa    MW: 37112.7 Da    PI: 7.2858
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58685795PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl
        Lsa013065 14 RGPWSPEEDAKLKSYIEEHGTGgNWIALPHKIGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding37.74.7e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
        Lsa013065  69 GSFSEEEDHIICTLYLSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.363962IPR017930Myb domain
SuperFamilySSF466891.38E-2611109IPR009057Homeodomain-like
SMARTSM007174.1E-131364IPR001005SANT/Myb domain
PfamPF002496.9E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-251569IPR009057Homeodomain-like
CDDcd001671.09E-91662No hitNo description
PROSITE profilePS5129422.08963117IPR017930Myb domain
SMARTSM007176.4E-1067115IPR001005SANT/Myb domain
PfamPF002496.8E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKSYIE EHGTGGNWIA LPHKIGLKRC GKSCRLRWLN  60
YLRPNIKHGS FSEEEDHIIC TLYLSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKDQQSSKK GAQVKQEMKR EVFDDLKPPS LCMSMNLYQS YWPSEYPLIL TNPDIHHQEQ  180
LHVKNQVPNF NQYPFDTTSN QAEMFHHNCD EKPISTTAYH PQLANTHYYP NGDGINLFQE  240
FNNYPYEINE LVYNTTQIEQ FDGLIGGLDN IINGSNCTSS SAESTPSWGD PLVCAPPQMG  300
YEDCRRELLQ NCHRDQQPSR FQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023764455.10.0transcription factor RAX3-like
SwissprotQ9M2Y97e-82RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A2J6LCD00.0A0A2J6LCD0_LACSA; Uncharacterized protein
STRINGEOX917831e-102(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-75myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]