PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013116
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28090 Da    PI: 9.1805
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58676277PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF871e-272272151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+ien s rqvtfskRr+g+lKKA+EL +LCdaev viifsstgklye++s
  Lsa013116 22 KKIENVSSRQVTFSKRRAGLLKKAKELAILCDAEVGVIIFSSTGKLYEFAS 72
               68***********************************************86 PP
2K-box67.44.9e-23951811298
      K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                +++++ + e++ Lk+ei +L++ qR ++G++Le L++keL++Le+qL++++  ++++K+  l+e+ie+++ +e+++ +en+aL+k++
  Lsa013116  95 ETQQEVDPEVEALKAEILKLRKGQRLMMGKELEGLTYKELEHLEHQLHDGMLAVKNRKDMALMEEIEQTKLREQRTMQENEALKKQI 181
                45789999****************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.8051474IPR002100Transcription factor, MADS-box
SMARTSM004323.8E-391473IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.03E-301587IPR002100Transcription factor, MADS-box
CDDcd002656.27E-411587No hitNo description
PRINTSPR004042.6E-281636IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001670IPR002100Transcription factor, MADS-box
PfamPF003191.1E-252370IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-283651IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-285172IPR002100Transcription factor, MADS-box
PfamPF014861.7E-1796181IPR002487Transcription factor, K-box
PROSITE profilePS5129712.38597188IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
XGDCGGEERR RKTMGRGRIE LKKIENVSSR QVTFSKRRAG LLKKAKELAI LCDAEVGVII  60
FSSTGKLYEF ASSRLQNIIS RYEKNSDCLD KPVPETQQEV DPEVEALKAE ILKLRKGQRL  120
MMGKELEGLT YKELEHLEHQ LHDGMLAVKN RKDMALMEEI EQTKLREQRT MQENEALKKQ  180
ILDHLTKSTT NSEIQLLGRN NHFNTPSSLG CLKRDNGDIG ISLHLGLSPH NDQHHKRKVP  240
KIELDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-191482169MEF2C
5f28_B9e-191482169MEF2C
5f28_C9e-191482169MEF2C
5f28_D9e-191482169MEF2C
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023731673.11e-180MADS-box transcription factor 23-like
TrEMBLA0A2J6KKJ41e-169A0A2J6KKJ4_LACSA; Uncharacterized protein
STRINGVIT_08s0007g08790.t015e-65(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.15e-49AGAMOUS-like 15