PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013141
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 296aa    MW: 33979.2 Da    PI: 7.2462
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-27450PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.71.5e-20105165259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                dDg+ WrKYGqKe+ ++++ r+YYrCt++   gC+++k+v++++++p+  +itY+ +H ++
  Lsa013141 105 DDGHVWRKYGQKEIINAKHKRNYYRCTHKfdqGCQATKQVQQTEHEPTKYKITYNRHHICN 165
                8***************************9999**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-2295165IPR003657WRKY domain
PROSITE profilePS5081118.41899162IPR003657WRKY domain
SuperFamilySSF1182902.22E-20101165IPR003657WRKY domain
SMARTSM007749.8E-28104166IPR003657WRKY domain
PfamPF031062.4E-20105164IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDSRSWPEGS PCRRSKATQE LIQWPENSYC VEDQALDIFG NTLSFMSSYS VNKVSKIPIN  60
NISSNCLDGR RSIATDKMVK TVKNSRGCYI RKRSWTSTKV TSLIDDGHVW RKYGQKEIIN  120
AKHKRNYYRC THKFDQGCQA TKQVQQTEHE PTKYKITYNR HHICNNFLST PQMIYDSINL  180
EDTSILLSFE SNGLVDKEQV GSHFPSYLHD KSKEALSFSE LTDNQPLCSL PSNLIMSDQS  240
APSLRSTRLA HGDVISKEVY SPIFEMDQIL ETIDYSENPF DLAHCELISL NYSFNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-19100164468OsWRKY45
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023749893.10.0probable WRKY transcription factor 38
TrEMBLA0A2J6M8Z40.0A0A2J6M8Z4_LACSA; Uncharacterized protein