PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013196
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family B3
Protein Properties Length: 404aa    MW: 46087.4 Da    PI: 5.741
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58682445PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-27766PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.12.7e-1743122287
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                +k +++ +v+   ++ lp +f++++  k  ++  ++lede g++Wevk+i +k++    l++GWk Fv a++L egD++vF+l+++
  Lsa013196  43 VKLMIRTNVTYGFWMGLPLPFCRSFLPK--QDCIMILEDEIGEKWEVKYIANKNG----LSAGWKIFVVAHDLIEGDVLVFHLIET 122
                688999999999**********999533..5568***************878887....***********************9864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-2235131IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.0E-1935131IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-2340136No hitNo description
PROSITE profilePS5086312.80242138IPR003340B3 DNA binding domain
SMARTSM010191.1E-1942133IPR003340B3 DNA binding domain
PfamPF023622.8E-1543122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
PSLSLKKRKS PTKSSKSPIP STPAMILAEE FQSSLGTEFP SCVKLMIRTN VTYGFWMGLP  60
LPFCRSFLPK QDCIMILEDE IGEKWEVKYI ANKNGLSAGW KIFVVAHDLI EGDVLVFHLI  120
ETYXIEVHAF EIYIIKASEP NEVDGAIGLL NLEPQENETE FPPDTPPPKS KKHKHVEVLD  180
PLPINMVKKN KKKSTLVKPI EVLEHSGTNS EEIGSEVLEP FTSIEDLKSF DHFRIKVNGQ  240
CIDSELPEEV KLGYYKLCIH KKQILHDCIR ENIYDKLVVG MIGETVTIAK EIKNCKLTIS  300
KEELEAWDNS LKSFEILGMK VGFLREKIRT LVGLVFESEF GVDVKRYVEA KKEEKGIQDE  360
IIRVKGKLLE LKIKARDFEG ELAGLKDKAE KYMMEFRDEV DVPW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023767913.10.0B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A2J6L5570.0A0A2J6L557_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-36B3 family protein