PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa013217

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MYB_related

Protein Properties

Length: 219aa MW: 23965.2 Da PI: 8.456

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-45875	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.1	5.5e-15	73	117	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r +Rt+ q+ s+ qky Lsa013217 73 PWTEEEHKLFLLGLKKYGKGDWRNISRNYVVTRTPTQVASHAQKY 117 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.727	66	122	IPR017930	Myb domain
SuperFamily	SSF46689	4.49E-17	67	121	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-18	69	121	IPR006447	Myb domain, plants
SMART	SM00717	9.3E-13	70	120	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-12	70	117	IPR009057	Homeodomain-like
CDD	cd00167	2.74E-12	73	118	No hit	No description
Pfam	PF00249	8.6E-13	73	117	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
XLVPGFGHDG PVAGEDGGGC DXDSIRNCED DVSSIEAGLY PKSPPYGGGG KRSPVDVIAA 60 GRPVEQERKK GVPWTEEEHK LFLLGLKKYG KGDWRNISRN YVVTRTPTQV ASHAQKYFIR 120 QLSGGKDKRR ASIHDITDSE VNENQNSLPK NKRTSPEQCK FQWSHPGGGG GDAAMAFDQT 180 NGSMFMSPRY KGNGGLHEFY GGSQSMVFQM QPAMHYPHG

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023739238.1	1e-135	transcription factor DIVARICATA-like isoform X3
Swissprot	Q8S9H7	3e-64	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A2J6K3E8	1e-127	A0A2J6K3E8_LACSA; Uncharacterized protein
TrEMBL	A0A2J6K3F0	1e-127	A0A2J6K3F0_LACSA; Uncharacterized protein
STRING	POPTR_0009s04730.1	4e-74	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58900.1	5e-37	Homeodomain-like transcriptional regulator

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]