PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013221
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C2H2
Protein Properties Length: 330aa    MW: 36774.8 Da    PI: 6.8532
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58680864PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00028140162123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C + F ++  L  H++ H
  Lsa013221 140 FSCNYCQRKFYSSQALGGHQNAH 162
                89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.76E-6136167No hitNo description
PROSITE profilePS5015711.281140167IPR007087Zinc finger, C2H2
PROSITE patternPS000280142162IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
SLIRAAPLPT NISTKHSLSI NNLFSPFQFP YPFGASKRKR SREREMELSY EEELVSSCDP  60
VFSDVEFRKP KEIMLKDEGE DEERDIGQEE EEEERKTKAC DGVDESRLNQ ELNLLDSLNM  120
GNSSESTTPQ ASDTTEPRVF SCNYCQRKFY SSQALGGHQN AHKRERNLAK RGQRMGFLSG  180
PMISAAAAFG HTYMQQQQHQ DQNYCSSLSS LPLHGYNNNR SLGIQVHSMI HKPSNSMFSS  240
SASGFKSFYG SKGWPSRPHV DQQPAIGKLS SASYASSLAA APSSHGGVGR FEVVRTGMSS  300
TGKDEIGGLW WPELKTNQDE SQKLDLSLKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023747091.10.0zinc finger protein 3-like
TrEMBLA0A2J6JLT60.0A0A2J6JLT6_LACSA; Uncharacterized protein
STRINGVIT_04s0008g05930.t016e-77(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.14e-38C2H2 family protein