PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa013249

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GRAS

Protein Properties

Length: 175aa MW: 20614.6 Da PI: 8.4366

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58670402	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	43	7.2e-14	2	172	205	374
GRAS 205 nlvlqlhrlldesvsleserdevLklvksl...sPkvvvvveqe.adh..nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnv 297 n+++ l ++ + + +++ e++k+ k++ + ++++ + e +++ ns++++ f + l +y al++s+e ++p+ e+ri +E +l++ +++ Lsa013249 2 NCMVGLPHMGRTRRTTQ--VLEFIKIAKGIlvkNKGIITFGDGEeSERmgNSPDYASFFNKHLAHYKALYESMEWGFPSYLnEARIAMETLFLAPYVSSF 99 66666666663333333..36677777776343445888887553444469************************9975599**********99 PP GRAS 298 vacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374 ++ + ++r++ + ++e +G+k ++s + ++a+ ++r+ + y++ ++++++vl W++ pLv vSaWr Lsa013249 100 SWFQKWK-EQREN------MVFQEgFGLKGERMSMESRNEAREMVREGQTP-YKIRvegDDHNEMVLEWREIPLVRVSAWR 172 8888887.33333......34444489999*************9944.6666447779****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	2.5E-11	2	172	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
FNCMVGLPHM GRTRRTTQVL EFIKIAKGIL VKNKGIITFG DGEESERMGN SPDYASFFNK 60 HLAHYKALYE SMEWGFPSYL NEARIAMETL FLAPYVSSFS WFQKWKEQRE NMVFQEGFGL 120 KGERMSMESR NEAREMVREG QTPYKIRVEG DDHNEMVLEW REIPLVRVSA WRQIK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023758272.1	1e-127	nodulation-signaling pathway 2 protein-like
TrEMBL	A0A2J6LQP0	1e-125	A0A2J6LQP0_LACSA; Uncharacterized protein
STRING	XP_004305115.1	2e-55	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	1e-07	GRAS family protein