PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013253
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 249aa    MW: 27842.1 Da    PI: 8.2269
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58677248PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+++++ +G+g +W + +++ g++R++k+c++rw++yl
        Lsa013253 14 RGPWSPEEDAILKNYIHNHGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding38.92e-1271111446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +T+eEd ++  +    G++ W+ Ia+++  gRt++++k++w++
        Lsa013253  71 FTEEEDNIISSLYVNIGSR-WSVIASKLH-GRTDNDVKNHWNT 111
                      9******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.615966IPR017930Myb domain
SuperFamilySSF466898.41E-2612109IPR009057Homeodomain-like
SMARTSM007171.2E-111364IPR001005SANT/Myb domain
PfamPF002492.1E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-231568IPR009057Homeodomain-like
CDDcd001676.60E-91662No hitNo description
PROSITE profilePS5129413.71667117IPR017930Myb domain
SMARTSM007179.7E-1067115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-2269117IPR009057Homeodomain-like
PfamPF002491.0E-1070111IPR001005SANT/Myb domain
CDDcd001671.05E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRSPCCDKA KVKRGPWSPE EDAILKNYIH NHGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPDIKLGG FTEEEDNIIS SLYVNIGSRW SVIASKLHGR TDNDVKNHWN TKLKKKLSLS  120
HNTSNATTTS VAPINHIQFS SPTNLPKQEV DHYQTIYKPI FDHSMMVDYQ QTPMTSDSTS  180
TSTINVNILS SQENHGFSPN AFPISNGYAS WCDNGGGVID SGSDFLTGEF DFRQVFGEVA  240
NFNYASPWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023735985.10.0transcription factor RAX2-like
TrEMBLA0A2J6KAT00.0A0A2J6KAT0_LACSA; Uncharacterized protein
STRINGEMJ056363e-73(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.19e-70MYB family protein