PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013283
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 250aa    MW: 28424.3 Da    PI: 7.9585
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58677750PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-6305PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.3e-161360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed ll+++++++G g W++I+ + g+ R++k+c++rw++yl
        Lsa013283 13 KGSWTAKEDMLLKKCIEKYGEGKWHLIPLRAGLSRCRKSCRLRWLNYL 60
                     799*******************************************97 PP
2Myb_DNA-binding22.52.8e-0766103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++ ++E +l+++++k+lG++        ++ gRt++++k++w++ 
        Lsa013283  66 RGNFGEDEVDLILRLHKLLGNR--------IP-GRTANDVKNYWNTN 103
                      899*****************99........**.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.618864IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-211062IPR009057Homeodomain-like
SuperFamilySSF466891.68E-2211100IPR009057Homeodomain-like
SMARTSM007171.3E-141262IPR001005SANT/Myb domain
PfamPF002496.5E-151360IPR001005SANT/Myb domain
CDDcd001671.69E-111560No hitNo description
Gene3DG3DSA:1.10.10.607.0E-1263107IPR009057Homeodomain-like
SMARTSM007172.3E-565106IPR001005SANT/Myb domain
PROSITE profilePS5129411.01765108IPR017930Myb domain
PfamPF002496.4E-666104IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MKPITATGLE VRKGSWTAKE DMLLKKCIEK YGEGKWHLIP LRAGLSRCRK SCRLRWLNYL  60
RPNIKRGNFG EDEVDLILRL HKLLGNRIPG RTANDVKNYW NTNLNPRSKQ PKKESSDVKP  120
LQHMITTTVI KPKPLAFSNT QNECMGDNPH IMANGGSSLI RTSNDGDNNM NISIGVTSSL  180
SILDDKSNEY LDDLFDDIQK EDGKFGWLFG GSPISEQELN VVEQEDGQNQ LFEFPMDDVA  240
WKLITDSNRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-18131047104B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023753993.10.0transcription factor MYB75-like
SwissprotQ9FNV95e-51MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2J6M0130.0A0A2J6M013_LACSA; R2R3-MYB transcriptional factor 1
STRINGXP_009605381.19e-56(Nicotiana tomentosiformis)
STRINGXP_009627993.11e-55(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-53myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]