PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa013292

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

BBR-BPC

Protein Properties

Length: 162aa MW: 18016.2 Da PI: 6.14

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58678355	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-17785	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	36.2	2e-11	1	108	1	93
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerd.............maflqrdkalae.rnkalverdnkllalll 86 m+ddg + rn+gyyep+ ++e+lglqlms i++ + +r+ +++ + +++ ++d +++ +rd++++ r ++++ ++++ + + Lsa013292 1 MEDDGLNMRNWGYYEPS--FREHLGLQLMSPIPDTKPFLSTRENSIMMNPNPTTNHDhipnyppsdpsipIHY-MRDNWIQReRFLHILPGNHNFPVIPT 97 9***99***99..*********976666677777788888888889999******9899.9***97355667777777666666 PP GAGA_bind 87 vensla....s 93 +++sl+ + Lsa013292 98 ASTSLVmpslH 108 66665555542 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	8.2E-6	1	157	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	5.9E-13	1	128	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MEDDGLNMRN WGYYEPSFRE HLGLQLMSPI PDTKPFLSTR ENSIMMNPNP TTNHDHIPNY 60 PPSDPSIPIH YMRDNWIQRE RFLHILPGNH NFPVIPTAST SLVMPSLHIA PPPPLDLSKD 120 TVTTMEDSVV DRKDSVNVNG GDGDRGGSVK KRGSTTTTAA AA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023755954.1	1e-116	protein BASIC PENTACYSTEINE2-like
TrEMBL	A0A2J6LVH0	1e-115	A0A2J6LVH0_LACSA; Uncharacterized protein
STRING	XP_006492290.1	6e-28	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	8e-16	basic pentacysteine 2