PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013322
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 591aa    MW: 65216.1 Da    PI: 6.3666
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58694147PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-4297PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.3e-07246266526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ f++ G C  Gd+C +aHg
  Lsa013322 246 PCPEFRK-GSCIKGDNCEYAHG 266
                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.6E-1720152IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.0E-1821173IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00916393IPR002110Ankyrin repeat
PfamPF127961.1E-963132IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.96363159IPR020683Ankyrin repeat-containing domain
CDDcd002042.10E-1565158No hitNo description
SMARTSM002484.4E-498130IPR002110Ankyrin repeat
PROSITE profilePS5008811.46198133IPR002110Ankyrin repeat
Gene3DG3DSA:4.10.1000.102.1E-4238268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.85241268IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5241267IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-5246266IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.23276300IPR000571Zinc finger, CCCH-type
SMARTSM0035646276299IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MEGEKFQENK NGFFLKSSIL LELAATDDVS EFVTTVEQKG MNLDEFSFWY GRRNGSKGKM  60
GFEERTPLMI AAVYGSIQVL KYIIGTKKVD VNKPSDSDGA TALHCAAAGG SSTSIDTVKL  120
LIEACADPNL TDDNDNKPVD LIARGIKSSK RKALEMLLRG FSISDEEETE ETETEIIAAK  180
KEYPVDVSLP DINDGVYGTD EFRMYMFKVK PCSRAYSHDW TECPFVHPGE NARRRDPRKH  240
QYSCVPCPEF RKGSCIKGDN CEYAHGVFES WLHPAQYRTR LCKDETGCAR KVCFFAHKVD  300
ELRPLYASTG SAVPSPKSGP IEMGSMSPMG LGSTSPMSPS NSPANGNMWQ NKFVHLTPPA  360
LQLPGSRLKT SLTARDLKME MEMEMEMLQR QQMIDDLSSN LYNNRFGEMK QTNYDDVFGS  420
QIQGLSPKVS STQSLLQSPS GHQIRQNSSP LRANYPSSPG RNPTSFGFDS SAAVAQAVMN  480
SRSGSFAKQR SQSFVDRGAG STMSLRSVPP SSTYSEWGSP DGKLEWGFNS EDASKLRKSA  540
SFGFRSGNGG SPVKGNHEQD GPWGGAGLYS SSEKVPQWVE QMYIDQEQLM A
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023752893.10.0zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2J6M2G80.0A0A2J6M2G8_LACSA; Uncharacterized protein
STRINGGorai.011G289400.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein