PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa013436

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GeBP

Protein Properties

Length: 402aa MW: 44582.4 Da PI: 5.1627

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-20463	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	127.4	6.2e-40	173	270	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkak.tgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 lfqrlwse+Deiv+L+G+id+k++ +g +p++d+ af+ef+kks++++vs+ qlv+K+rrLKkK+ ++ ++ k+gk+ sfsk+h+qk +elsk iWgs Lsa013436 173 LFQRLWSEDDEIVILKGMIDYKTEkNGENPVADMGAFHEFIKKSLHVDVSRAQLVDKVRRLKKKYVNNASREKDGKDRSFSKSHEQKGYELSKLIWGS 270 79*****************7651577******************************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.7E-34	174	269	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MAHNRQSDLK PNHPSSSDDE EEEEEEEEVS GSEDEQTSDS GSEEASDSDS EPKQKQEPKK 60 PLIPPRQLAT KPQPPDLSSS ETEESGSDTD SDSQPKKSMV ADPNIKPISS KPMEREDVAN 120 VESKSAKKSG SKASSVPSPA KAKRPAPPPV VEKDTKKAKK STTTTDDDSK KQLFQRLWSE 180 DDEIVILKGM IDYKTEKNGE NPVADMGAFH EFIKKSLHVD VSRAQLVDKV RRLKKKYVNN 240 ASREKDGKDR SFSKSHEQKG YELSKLIWGS SNSPNTGTES KKTQPQKNGG AKGNANANPS 300 TSSVVALEKT NGVDEKEGLT MEAEKNMDVS RFVQYGRMSY SPVMEEEIMK AGLELVEGSK 360 KEELKEKWNK LKMQELQLYV QRMDLIKEQA AVVFEAMNSA GN

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MAHNRQSDLK PNHPSSSDDE EEEEEEEEVS GSEDEQTSDS GSEEASDSDS EPKQKQEPKK  60
PLIPPRQLAT KPQPPDLSSS ETEESGSDTD SDSQPKKSMV ADPNIKPISS KPMEREDVAN  120
VESKSAKKSG SKASSVPSPA KAKRPAPPPV VEKDTKKAKK STTTTDDDSK KQLFQRLWSE  180
DDEIVILKGM IDYKTEKNGE NPVADMGAFH EFIKKSLHVD VSRAQLVDKV RRLKKKYVNN  240
ASREKDGKDR SFSKSHEQKG YELSKLIWGS SNSPNTGTES KKTQPQKNGG AKGNANANPS  300
TSSVVALEKT NGVDEKEGLT MEAEKNMDVS RFVQYGRMSY SPVMEEEIMK AGLELVEGSK  360
KEELKEKWNK LKMQELQLYV QRMDLIKEQA AVVFEAMNSA GN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023731512.1	0.0	STOREKEEPER protein-like
TrEMBL	A0A2J6KKR4	0.0	A0A2J6KKR4_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	8e-30	DNA-binding storekeeper protein-related transcriptional regulator