PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa013437

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MYB

Protein Properties

Length: 241aa MW: 27757.6 Da PI: 5.5785

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58671721	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.6	1.2e-07	3	34	17	48
HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++G +W++ ++ +g+ R++k+c++rw +yl Lsa013437 3 HRYGHWNWALLPKFIGLSRSGKSCRLRWMNYL 34 578877************************97 PP
2	Myb_DNA-binding	60.3	4.2e-19	41	85	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g++T+eEd+l +d++++lG++ W+tIa +++ gR+++++k+rw+++l Lsa013437 41 GNFTKEEDDLVIDLHNKLGNK-WSTIATKLP-GRSDNEIKNRWNTHL 85 89*****************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	7.588	1	34	IPR017930	Myb domain
SMART	SM00717	62	1	36	IPR001005	SANT/Myb domain
CDD	cd00167	7.47E-4	3	34	No hit	No description
Pfam	PF00249	3.0E-6	3	34	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.4E-14	4	40	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.51E-25	20	95	IPR009057	Homeodomain-like
PROSITE profile	PS51294	28.002	35	89	IPR017930	Myb domain
SMART	SM00717	1.6E-17	39	87	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-27	41	89	IPR009057	Homeodomain-like
Pfam	PF00249	4.9E-17	41	85	IPR001005	SANT/Myb domain
CDD	cd00167	3.90E-13	42	85	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
XSHRYGHWNW ALLPKFIGLS RSGKSCRLRW MNYLRPNIKH GNFTKEEDDL VIDLHNKLGN 60 KWSTIATKLP GRSDNEIKNR WNTHLKKRVQ NEHIESSNEH LGTLEYDQAS SKRKPVNKTD 120 LKHQPEARTN LLAGESSESL SYSSVTEISS CQLSDSDCAV FSDFTPLAFN DDELVDNFWS 180 EPFLTDIDVT APSGNYKLLS PLNFVNEFSS QYSYQDLMMA DDQCLWSMMA DSYVENNIFI 240 N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-21	4	89	24	108	B-MYB

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023765923.1	1e-179	transcription factor MYB4-like
TrEMBL	A0A2J6L921	1e-178	A0A2J6L921_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	3e-41	myb domain protein 15