PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013453
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 635aa    MW: 70074.8 Da    PI: 6.8267
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58695158PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-26605PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21e-06247267526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ f++ G C  Gd+C +aHg
  Lsa013453 247 PCPEFRK-GSCVKGDSCEYAHG 267
                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.203.5E-1820163IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.44E-1740146IPR020683Ankyrin repeat-containing domain
PfamPF127964.3E-1259132IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.31663159IPR020683Ankyrin repeat-containing domain
SMARTSM002488.3E-46393IPR002110Ankyrin repeat
CDDcd002045.78E-1765158No hitNo description
PROSITE profilePS5008812.60998133IPR002110Ankyrin repeat
SMARTSM002481.3E-498130IPR002110Ankyrin repeat
SMARTSM003561.0E-5242268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.009242269IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-5243268IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.371277301IPR000571Zinc finger, CCCH-type
SMARTSM0035670277300IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MDGEKFQEKY NGLFLKCSNL LELAAADDVS GFIYMVEEKG ENLDEISFWY GRRNGCKGKM  60
GLEERTPLMI ASMYGSIHVV KYIINTKKVD VNRISDSDGA TALHCAAAGG SPMSVEVVKL  120
LLQASADVNL TDGEGNKPGD LIARGIKSTK PRVLEMLLRG FGIEDGSDEE QTEEKEVVSA  180
KKEYPVDVSM PDINNGVYGS DEFRMYTFKV KPCSRAYTHD WTECPFVHPG ENARRRDLRK  240
FNYSCVPCPE FRKGSCVKGD SCEYAHGVFE SWLHPAQYRT RLCKDEIGCA RKVCFFAHRV  300
EELRPVYAST GSALPSPKSG SVAVNSMEMG SMSPLALGST PPMSPPTSPM WQNKVNHLTP  360
PALQLPGSRL KTALNARDLE IDMELLGSES IRTQQQQRRQ MIDDLATNLY NHNNRFGELN  420
LKPTNLDDVF GSIDQSLLSQ FHGLSPKVSS SMTNSPIQLQ SPTSHQQFRQ NSNPLRASYP  480
SPNYSSSPVR KPTSYGFDSS AAVAQAVMNS RSGSFTKQRS QSFIDRGAGA TMSLRSVPQQ  540
TSTFTEWGSP DGKLEWGYSG EDANKLRKSA SFGYGGGAAV NMNNEPDVSW VNTLVKDVGV  600
GLHSSPEKHR YGGAGGDKLP QWIEQMYIEQ EQMVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023748561.10.0zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2J6JIF50.0A0A2J6JIF5_LACSA; Uncharacterized protein
STRINGGorai.011G289400.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein