PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013456
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 311aa    MW: 32532.4 Da    PI: 5.9121
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58687769PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-55566PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.2e-10160204554
                HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Lsa013456 160 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 204
                99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-15153215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-15157214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-7160204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MANSNPSDGS ADDFFEQILG FPAYPGGATD PNLSVNEGGM GGPGGNSMML QLSSAGDVGS  60
GHHHLGGGVG VGGGGAGGGF HFPLGLSLEH GKGGFLKMDD ASGSGKRFRD DVVDSRVSSS  120
GFQGQSMGGG GGNTVQTTPN PPTARPTRVR ARRGQATDPH SIAERLRRER IAERIRALQE  180
LVPSVNKTDR AAMLDEIVDY VKFLRLQVKV LSMSRLGGAS AVAPLVTDIP ISSVEEEAGE  240
GGRNQPAWEK WSNDGTERQV AKLMEENVGA AMQFLQSKAL CIMPISLASA IYHTQPPDST  300
SIIKPESEPP L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164169RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023773049.10.0transcription factor UNE12
SwissprotO227681e-115UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2J6KTG90.0A0A2J6KTG9_LACSA; Uncharacterized protein
STRINGevm.model.supercontig_52.971e-140(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-89bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]