PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013611
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C2H2
Protein Properties Length: 269aa    MW: 28733.9 Da    PI: 8.6021
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58678230PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-28885PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0006164186123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ C+++F++   L  H r+H
  Lsa013611 164 HECSVCHRTFPTGQALGGHKRRH 186
                78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.5E-12110134IPR007087Zinc finger, C2H2
SuperFamilySSF576675.67E-7110132No hitNo description
SMARTSM003550.027110132IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411110137IPR007087Zinc finger, C2H2
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
SuperFamilySSF576675.67E-7159186No hitNo description
PfamPF139125.0E-13163188IPR007087Zinc finger, C2H2
SMARTSM003550.073164186IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868164192IPR007087Zinc finger, C2H2
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MALQALNSPA TNTAASPPSF HYKDMNFPTA TVIQDSWNKG KRSKRPRTTT STDSDITHPS  60
EPEQPTEEEY LAFCLMLLSR GRTDTTSTAA AAAVAAQSPP LPPLHQSVSH KCSVCNKGFS  120
SYQALGGHKA SHRKNVSEDH PSTSATTTAS ASASSVLKPS GRTHECSVCH RTFPTGQALG  180
GHKRRHYDGN NPGTGATASG VTTSEKTTSS THSQPRGFDL NLPAFPEFQL GLSVDCAKKS  240
QLFMSEQEVE SPHPAKKQLL SVAVDLPNY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023771916.10.0zinc finger protein ZAT10-like
TrEMBLA0A2J6KW530.0A0A2J6KW53_LACSA; Uncharacterized protein
STRINGXP_009772006.11e-67(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-46salt tolerance zinc finger