PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013641
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 419aa    MW: 47369.9 Da    PI: 5.2743
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58688146PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.74.9e-14195241354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++h + E+ RR+++N++f+ L+ l+P++     +K + a+++  A+eYI++L
  Lsa013641 195 TKHFATEKHRRQQLNDKFDALKNLVPNP-----TKADRASVVGDAIEYINEL 241
                78**************************.....9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.243192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-15193255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14195249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-11195241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.45E-12195246No hitNo description
SMARTSM003532.9E-13198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MYEGSACYDP TLIDHQEDHV HNFHQNPNFS SIEASTDYQL INMDMEHQNQ IIHDLNWTTH  60
SHDQIQIGND NNCFPNMPLI TPNPTPPDLL NLFQLPRCSN SSISFSNPTH MDQNSYDPLL  120
PLNLPPQPPF FRELLHSLPN GYNLTGGGSI FGDMDMEREG VRGDLHQLYH EGDGILKFNG  180
EISGIVGKGR DVKDTKHFAT EKHRRQQLND KFDALKNLVP NPTKADRASV VGDAIEYINE  240
LKRTVEELTI LVERKRCNRG RMKKHKAEDD STLDVESINT RPNGGGDHDQ QAYNGNSTST  300
LRSSWLQRKS KNTEVDVRII DDEVTIKLVQ QKKINCLLFV SKVLDELQLD LHHVAGGLIG  360
DFYSYLFNTK ICEGSSVYAS AIANKLIEVV EDTMQVSHQL RAISDKNELD VEEQNTGIA
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023754999.10.0transcription factor bHLH10-like
SwissprotQ84TK14e-89BH010_ARATH; Transcription factor bHLH10
TrEMBLA0A2J6LXR20.0A0A2J6LXR2_LACSA; Uncharacterized protein
STRINGVIT_15s0107g00380.t011e-126(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.19e-83bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]