PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013647
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 238aa    MW: 26662 Da    PI: 4.8204
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-27156PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.1e-134991754
               HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 Er+RR+++N++++ Lr ++Pk +      K++Ka+i + A+eYI+ L
  Lsa013647 49 VSERNRRKKLNDRLFALRAVVPKiS------KMDKASIIKDAIEYIQIL 91
               57*********************66......***************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.4284291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-1742108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.69E-124596No hitNo description
Gene3DG3DSA:4.10.280.101.3E-1548108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-144897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-114991IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MATTEAIGNP YSKPEDYNSW GGLEETLSSY YDSSSPDGSQ SATASKNIVS ERNRRKKLND  60
RLFALRAVVP KISKMDKASI IKDAIEYIQI LHDQERTIQA ELIQLEAEKL ESENLDFGQE  120
AGFMPXERSN KKRLVQALDP SGSRSYPIEV LELSVSSVGE KTVLVNLKCS KRRDTIVKLC  180
QVFESLKLKI VTANMSVFSE MLFNTLFIQA DEEETDFLKI QIETAISALN GSQSPMSM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166172LKCSKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023748571.11e-162transcription factor bHLH35-like
SwissprotQ2HIV92e-72BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2J6M9J61e-161A0A2J6M9J6_LACSA; Uncharacterized protein
STRINGVIT_11s0052g00100.t013e-97(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-63bHLH family protein