PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa013663

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

SRS

Protein Properties

Length: 412aa MW: 42925 Da PI: 8.0078

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58692324	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-44111	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	213	7.4e-66	193	351	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelets 103 t++CqdCGnqakkdC+h+RCRtCCksrg+dCathvkstWvpaa+rrerq ++++ + + +sa+++ +k++r + +++++ s+t++s++++++++ets Lsa013663 193 STMTCQDCGNQAKKDCTHRRCRTCCKSRGYDCATHVKSTWVPAARRRERQLMTSTG-AATVSSASTSGPKKPRLT--SHTTTNSHTSTSNTTPPRSFETS 289 579********************************************7776665.444556677788888865..899999999********99 PP DUF702 104 s...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s lP +v+++avf+cvrv++v+dg++e+aYq++ +igGhvfkG+LydqG+e+ Lsa013663 290 SshhqdasfkesLPGQVRAPAVFKCVRVTAVEDGDDEYAYQASATIGGHVFKGFLYDQGVET 351 999******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.8E-61	194	350	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.1E-27	196	238	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.4E-28	302	349	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
LAVVATSRSS RLPSDSGAFA DWVANPSSSS ALRPSDQDLS LGFNAGPATA GGVSTGMWSS 60 APSARQINYG LPEMGMLGLR DVFVVAPSSH HNLSDHHSIN SSVANANAAT ALGVGVIPLL 120 STTPCLNVEE GMLNNRGSGR NSNANNNSNY SIQFWQQHPQ TQPHNYLNKP MISDHGFLQG 180 SVGGGGSTST SGSTMTCQDC GNQAKKDCTH RRCRTCCKSR GYDCATHVKS TWVPAARRRE 240 RQLMTSTGAA TVSSASTSGP KKPRLTSHTT TNSHTSTSNT TPPRSFETSS SHHQDASFKE 300 SLPGQVRAPA VFKCVRVTAV EDGDDEYAYQ ASATIGGHVF KGFLYDQGVE TRDHSNIPNF 360 SELHLGGGGG GGGSGGRNVD GSSSSPLLDP SEVYGSSGGG LLAGSTYGNP IN

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

LAVVATSRSS RLPSDSGAFA DWVANPSSSS ALRPSDQDLS LGFNAGPATA GGVSTGMWSS  60
APSARQINYG LPEMGMLGLR DVFVVAPSSH HNLSDHHSIN SSVANANAAT ALGVGVIPLL  120
STTPCLNVEE GMLNNRGSGR NSNANNNSNY SIQFWQQHPQ TQPHNYLNKP MISDHGFLQG  180
SVGGGGSTST SGSTMTCQDC GNQAKKDCTH RRCRTCCKSR GYDCATHVKS TWVPAARRRE  240
RQLMTSTGAA TVSSASTSGP KKPRLTSHTT TNSHTSTSNT TPPRSFETSS SHHQDASFKE  300
SLPGQVRAPA VFKCVRVTAV EDGDDEYAYQ ASATIGGHVF KGFLYDQGVE TRDHSNIPNF  360
SELHLGGGGG GGGSGGRNVD GSSSSPLLDP SEVYGSSGGG LLAGSTYGNP IN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023745246.1	0.0	protein LATERAL ROOT PRIMORDIUM 1-like
Refseq	XP_023745247.1	0.0	protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	8e-86	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2J6JQP2	0.0	A0A2J6JQP2_LACSA; Uncharacterized protein
STRING	EOY32912	1e-130	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	3e-86	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]