PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa013780

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bZIP

Protein Properties

Length: 407aa MW: 45530.2 Da PI: 10.0807

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-43185	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46	1.2e-14	329	380	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +r rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L k+ ee++++ Lsa013780 329 RRRRRMIKNRESAARSRARKQAYTLELEAEVAKLKELNHELMKKQEEITEMQ 380 689********************************************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-12	325	389	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.749	327	378	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.9E-12	329	380	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.6E-13	329	378	No hit	No description
SuperFamily	SSF57959	4.99E-10	329	378	No hit	No description
PROSITE pattern	PS00036	0	332	347	IPR004827	Basic-leucine zipper domain
CDD	cd14707	2.85E-21	334	383	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MSSFINFRNF VDTSQPEMNG IRQMAPNSPL TRQSSIYSLT FDELQNTLGG GGKDFGSMNM 60 DELLKNIWTA EETQSMALTS NFGIPNNGNG NIQRQGSLTL PRTLSQKTVD EVWRELMKSN 120 GGGKGGDLIG EINLQAEQRE PTLGEMTLED FLLKAGVVTE NNQIQTNEGS MRPQNPQNAQ 180 NSSYFGDVSQ NVENNSFIFG FQNPNQNHGF QQQITENKNG LNLQPKPNPN QKSQPQPQPL 240 FPKQAALDFT APLNGKSENP MKINVVQANG VENGVMNMKK LGGPGAGSPR NLIPKTNVDS 300 TPSPPFYAFD EGGFRGRRSS GTLEKVVERR RRRMIKNRES AARSRARKQA YTLELEAEVA 360 KLKELNHELM KKQEEITEMQ RNQIVEKMKL PWGSKRLCLR RTLTGPW

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MSSFINFRNF VDTSQPEMNG IRQMAPNSPL TRQSSIYSLT FDELQNTLGG GGKDFGSMNM  60
DELLKNIWTA EETQSMALTS NFGIPNNGNG NIQRQGSLTL PRTLSQKTVD EVWRELMKSN  120
GGGKGGDLIG EINLQAEQRE PTLGEMTLED FLLKAGVVTE NNQIQTNEGS MRPQNPQNAQ  180
NSSYFGDVSQ NVENNSFIFG FQNPNQNHGF QQQITENKNG LNLQPKPNPN QKSQPQPQPL  240
FPKQAALDFT APLNGKSENP MKINVVQANG VENGVMNMKK LGGPGAGSPR NLIPKTNVDS  300
TPSPPFYAFD EGGFRGRRSS GTLEKVVERR RRRMIKNRES AARSRARKQA YTLELEAEVA  360
KLKELNHELM KKQEEITEMQ RNQIVEKMKL PWGSKRLCLR RTLTGPW

Functional Description ? help Back to Top
Source	Description
UniProt	Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:11884679, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16463099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023747489.1	0.0	bZIP transcription factor 23-like
Swissprot	Q9M7Q2	7e-96	AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7
TrEMBL	A0A2J6JKL6	0.0	A0A2J6JKL6_LACSA; Uncharacterized protein
STRING	XP_009791697.1	1e-115	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.1	7e-78	abscisic acid responsive element-binding factor 1

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877] Muñiz García MN,Cortelezzi JI,Fumagalli M,Capiati DA Expression of the Arabidopsis ABF4 gene in potato increases tuber yield, improves tuber quality and enhances salt and drought tolerance. Plant Mol. Biol., 2018. 98(1-2): p. 137-152 [PMID:30143991]