PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa013859

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

WRKY

Protein Properties

Length: 217aa MW: 25038.4 Da PI: 7.7387

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-4591	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.1	1.2e-30	154	212	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YYrC+ agC+vkk+ver+ ed ++v++tYeg Hnh+ Lsa013859 154 LDDGFKWRKYGKKMVKNSPNPRNYYRCSAAGCSVKKRVERDVEDARYVITTYEGIHNHQ 212 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.6E-33	139	214	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-27	147	214	IPR003657	WRKY domain
PROSITE profile	PS50811	30.917	149	214	IPR003657	WRKY domain
SMART	SM00774	9.1E-35	154	213	IPR003657	WRKY domain
Pfam	PF03106	1.6E-23	155	212	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
XDDTLRTFFH ASRKVATKPP LEMIYHQEQQ TLNLHTKMNY YDHQMSKAYS YRSVDSPDMD 60 YDVPNQQTYE FVESFLSFDD WITEDKASTV PEYQDHTPVY PSATIEDGGL SIGSSSSNSH 120 LHDGSRSRAT GFGQAQNGKK EKVAFKTKSQ VEILDDGFKW RKYGKKMVKN SPNPRNYYRC 180 SAAGCSVKKR VERDVEDARY VITTYEGIHN HQRPSNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-25	138	215	1	78	Probable WRKY transcription factor 4
2lex_A	3e-25	138	215	1	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023735828.1	1e-147	probable WRKY transcription factor 50
Swissprot	Q8VWQ5	6e-39	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	A0A2J6KAY8	1e-127	A0A2J6KAY8_LACSA; Uncharacterized protein
STRING	XP_010047371.1	3e-52	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	4e-38	WRKY DNA-binding protein 50

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]