PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa013922

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bHLH

Protein Properties

Length: 274aa MW: 31206 Da PI: 5.8757

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58678574	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	8.5e-11	142	189	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+ ++P + +k K+ +Le++++Y++sLq Lsa013922 142 SHSLAERVRREKISEKMKALQAIVPGC----DKITGKVLMLEEVINYVQSLQ 189 8***********************9....899***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.57E-11	136	193	No hit	No description
SuperFamily	SSF47459	4.97E-16	136	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.199	138	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-15	139	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-8	142	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-9	144	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MEVSPFHEQH HPFLLDQSLL YPATTGTITD SIGFSDEFQL SHDDHIIPNG AIEMSAHSNQ 60 VDICNNLKSS ESPMPMVVHG HIHEKTMPTT DSYGMTKNTC NKCRNQNKSN IEQEKNKKLR 120 YSKEGQIGYV YVRARRGEAT DSHSLAERVR REKISEKMKA LQAIVPGCDK ITGKVLMLEE 180 VINYVQSLQN EIQFLSSKLA CVNPMYYSAS NFDASMLNTH QNMTTNQQHL LSFQEHQMSN 240 VGFENDKEVL WDLEEQIQGF EEPFAIINSS NSFN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023758157.1	1e-109	transcription factor bHLH137-like
TrEMBL	A0A2J6MGY1	0.0	A0A2J6MGY1_LACSA; Uncharacterized protein
STRING	Solyc06g072520.1.1	4e-46	(Solanum lycopersicum)