PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa013943

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

DBB

Protein Properties

Length: 319aa MW: 34872.3 Da PI: 7.154

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58685104	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-25674	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.6	2.2e-07	4	35	5	36
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ ++e+e++ +C ++ lC+ C H+ Lsa013943 4 QCDVCNENEASVYCSADEAALCAACDHRVHHA 35 7**************************99743 PP
2	zf-B_box	29.2	2e-09	55	92	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + C+ ++ek++ lfC++++ lC+dC +++Hk Ht Lsa013943 55 SPLCDICQEKKAFLFCQQDRAILCKDCDVAIHKVnqHT 92 689*****************************656665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.552	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.71E-7	3	47	No hit	No description
Pfam	PF00643	2.3E-5	4	42	IPR000315	B-box-type zinc finger
SMART	SM00336	5.5E-7	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	5.7E-16	53	100	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.424	53	100	IPR000315	B-box-type zinc finger
Pfam	PF00643	5.1E-8	55	92	IPR000315	B-box-type zinc finger
CDD	cd00021	1.34E-10	56	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MKIQCDVCNE NEASVYCSAD EAALCAACDH RVHHANKLAG KHPRFSLLHP SPKDSPLCDI 60 CQEKKAFLFC QQDRAILCKD CDVAIHKVNQ HTQNHNRFLL TGVKLSPTAS LYSSSTPPAV 120 IPTTKNGVVP DQLPEPLPSP IMNQTTFKTP NCHHESNGSG NGSTTSSISE YLIEMLPGWH 180 VEDFLDAPSN FSKVVDNDPS LMWGGDLLEG SLNSGFSPES MGMWVPQAPP PAAPPPPPPQ 240 SRYAHLGQRF EPSSMMGFGD QTINGSSLIF APNSYINHNK ITNSTKSTRK RTPDNGNCFT 300 VPQISPPTTT SKRSRTLWH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024963147.1	1e-167	B-box zinc finger protein 21-like
TrEMBL	A0A2J6KJS4	0.0	A0A2J6KJS4_LACSA; Uncharacterized protein
STRING	XP_009787732.1	3e-97	(Nicotiana sylvestris)