PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa014003
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 622aa    MW: 71259.3 Da    PI: 7.8423
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58694074PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-15220PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07458497238
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlk 38 
                      ++W +eE ell ++++++++g   +W+ I++++g++R+  
        Lsa014003 458 KPWGKEEIELLRKGIAKYPKGtsrRWEVISEYIGTNRSVD 497
                      68********************************999976 PP
2Myb_DNA-binding254.5e-08567610344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                       W+      l++avk ++++   +W++Ia+ ++ g+t ++ck  +
        Lsa014003 567 VWSSVQVTALIQAVKTFPKEgsqRWERIAAAVP-GKTVNDCKKQF 610
                      699999999*********99*************.********877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465657.46E-2177177IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1103.0E-2196198IPR001623DnaJ domain
SMARTSM002711.7E-1598173IPR001623DnaJ domain
PfamPF002269.0E-1899178IPR001623DnaJ domain
CDDcd062572.24E-1299170IPR001623DnaJ domain
PROSITE profilePS5007618.47199181IPR001623DnaJ domain
PRINTSPR006252.1E-8104122IPR001623DnaJ domain
PRINTSPR006252.1E-8122137IPR001623DnaJ domain
PRINTSPR006252.1E-8153173IPR001623DnaJ domain
PROSITE patternPS006360158177IPR018253DnaJ domain, conserved site
PROSITE profilePS512936.295455510IPR017884SANT domain
SuperFamilySSF466897.1E-7456500IPR009057Homeodomain-like
SMARTSM007174.6E-6456509IPR001005SANT/Myb domain
PfamPF002491.2E-6458499IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-4459499IPR009057Homeodomain-like
CDDcd001671.59E-4459499No hitNo description
PROSITE profilePS512938.045563618IPR017884SANT domain
SMARTSM007177.3E-8564616IPR001005SANT/Myb domain
SuperFamilySSF466893.2E-8566620IPR009057Homeodomain-like
PfamPF002493.3E-6567610IPR001005SANT/Myb domain
CDDcd001676.26E-6568614No hitNo description
Gene3DG3DSA:1.10.10.606.5E-6568611IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MTAQTSILYI TYSNELLNGE SIFVSSNCYP VKASRFEPAG HSFHDAALKL RGCFMEENTD  60
DNDDNQNSPK DKEHDYMQSS DSYSSKGKKK SGDGPNKQDH YALLGLGHLR YLATEDQIRK  120
SYRETALKHH PDKQAALLLV EETESAKQAK KDEIENRFKA IQEAYEVLID PVKRRIYDST  180
DEFDDEIPSD CAPQDFFKVF GPAFLRNGRW SVVQPIPFLG DENTPLKDVD LFYDFWYGFK  240
SWREFPHADE HDLDQAESRD EKRWMERQNA KLSEKARKEE YVRIRALVDN AYKRDPRVLK  300
RKELMKAEKQ KKKEAKFMAK KLQEEEAIRI AEEEKRKKEE AEKEAAEAAS QQKKIKEKEK  360
KLLRKERTRL RTLSNNVVSQ RLLNITNDDV ENLCMSLDIL KLKDLCDNLE TKEGSSQAEL  420
LQEAISNTDV SDKDYIPKNV PNGSVKVNGN APKNNSPKPW GKEEIELLRK GIAKYPKGTS  480
RRWEVISEYI GTNRSVDEIL KATKTVLLQK PDATKAFDSF LEKRKPGPVI SSPLSTKEES  540
EGVSLTNGSE KADEVVENGV ANGEEDVWSS VQVTALIQAV KTFPKEGSQR WERIAAAVPG  600
KTVNDCKKQF TLLKEKFRNK KK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A4e-1719529820123Zuotin
5dje_B4e-1719529820123Zuotin
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023768750.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A2J6L3470.0A0A2J6L347_LACSA; Uncharacterized protein
STRINGXP_010067661.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain