PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa014006

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

FAR1

Protein Properties

Length: 668aa MW: 76817.8 Da PI: 8.5138

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-18411	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.5	3.4e-21	52	135	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA+e+GF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++ +w++ ++ l+HnH l Lsa014006 52 NYYNCYAREAGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMVRMRLVDSRRWRILEVTLDHNHLL 135 69***************************************9988.....99*******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-18	52	135	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.4E-24	261	357	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.73	547	583	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	0.0011	557	579	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.0E-6	558	585	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence Send to blast
MKHLDLIQME QVSPNSKHQN SEKPELESEN GKKEFVAPCV GMEFESYDDA YNYYNCYARE 60 AGFRVRVKNS WFKRNSREKY GAVLCCSSQG FKRIKDVNRL RKETRTGCPA MVRMRLVDSR 120 RWRILEVTLD HNHLLGTKSF KSFKKTGICG TKNTIQSDSE GQTQTVKLYR ALVIDSGGNN 180 GISHETGREL GSGSGPVPDF HPDRLNLKKG DSQAIYNYIC RMQLTNPNFF YLMDVNDEGR 240 LRNMIWLDAR CRAAIGYFSD VVYFDTSYLS SKYEVPLVTF VGMNHHCQTV LLGCGLLSGG 300 TKESFSWVLK AWLTLTTTSG RVPQTIVTDR CRVLQSVVSE VFPKTHHRFS LLHIMKKVPE 360 KLGGLRNYDA IKKVLLKTAY ETLKPYDFET SWGFMIQRFG IGDHEWLRSL YEDRAWWAPV 420 YLKDTSFAGI SSGDTLCPVF DKYIHKQTPL KEFLDKYELA LQKKHKEEAN ADMESRTVSP 480 VLKTRCSFEL QLSKIYTREI FKKFQVEVEE MYSCFSTTQV HVDGAVVIFL VKERALADGS 540 RREIKDYEVL YNRGAVDVRC ICSCFNFNGY LCRHALCVLN FNGVEEIPSK YILSRWKRDY 600 KRLYVPDYDA AGCNTVTGTD AVQGFTQLYR SALQVVEEGV ISLDHYKVAL DTFGECLSRV 660 HNIEDKHE

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence Send to blast

MKHLDLIQME QVSPNSKHQN SEKPELESEN GKKEFVAPCV GMEFESYDDA YNYYNCYARE  60
AGFRVRVKNS WFKRNSREKY GAVLCCSSQG FKRIKDVNRL RKETRTGCPA MVRMRLVDSR  120
RWRILEVTLD HNHLLGTKSF KSFKKTGICG TKNTIQSDSE GQTQTVKLYR ALVIDSGGNN  180
GISHETGREL GSGSGPVPDF HPDRLNLKKG DSQAIYNYIC RMQLTNPNFF YLMDVNDEGR  240
LRNMIWLDAR CRAAIGYFSD VVYFDTSYLS SKYEVPLVTF VGMNHHCQTV LLGCGLLSGG  300
TKESFSWVLK AWLTLTTTSG RVPQTIVTDR CRVLQSVVSE VFPKTHHRFS LLHIMKKVPE  360
KLGGLRNYDA IKKVLLKTAY ETLKPYDFET SWGFMIQRFG IGDHEWLRSL YEDRAWWAPV  420
YLKDTSFAGI SSGDTLCPVF DKYIHKQTPL KEFLDKYELA LQKKHKEEAN ADMESRTVSP  480
VLKTRCSFEL QLSKIYTREI FKKFQVEVEE MYSCFSTTQV HVDGAVVIFL VKERALADGS  540
RREIKDYEVL YNRGAVDVRC ICSCFNFNGY LCRHALCVLN FNGVEEIPSK YILSRWKRDY  600
KRLYVPDYDA AGCNTVTGTD AVQGFTQLYR SALQVVEEGV ISLDHYKVAL DTFGECLSRV  660
HNIEDKHE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023750557.1	0.0	protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2U1LRW9	0.0	A0A2U1LRW9_ARTAN; FAR1-related sequence 6
STRING	VIT_09s0002g07400.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]