PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa014047
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C2H2
Protein Properties Length: 185aa    MW: 21041.8 Da    PI: 6.9003
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58696803PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.5e-054567123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C+ C + F++   L  H+++H
  Lsa014047 45 YSCNFCRREFRSAQALGGHMNVH 67
               99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.91E-74272No hitNo description
Gene3DG3DSA:3.30.160.602.7E-44371IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6354572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEQYSQYLMW VKSKNSILKN SWEEQAFAED ARGPLGGFVW PPRSYSCNFC RREFRSAQAL  60
GGHMNVHRRE RAKLKQSING TQQNPKSLLE STNPISFLST DSPFRVSSIP ILGQESTTPG  120
SNSDIKSCVC DEAFVFGPVE TNLSLGFDGC DDEEVMNCKR QKKVVWPLFM HSMEDHVDLE  180
LRLAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A7e-134067229superman protein
2l1o_A7e-134067229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16775RRERAKLKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023737264.11e-138zinc finger protein 10-like
TrEMBLA0A2J6K7T61e-137A0A2J6K7T6_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.13e-26C2H2 family protein