PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa014275
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WOX
Protein Properties Length: 264aa    MW: 29693.9 Da    PI: 6.7239
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58678789PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-15656PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.73.4e-2278138257
                T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                r+R+t+t+ ql++Le+lFe+ n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  Lsa014275  78 RQRWTPTPVQLQILERLFEQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 138
                89*****************99**************************************97 PP
2Wus_type_Homeobox101.46.5e-3378140365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        r+RWtPtp Q++iLe+l+++G  tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq
          Lsa014275  78 RQRWTPTPVQLQILERLFEQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 140
                        79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.33774139IPR001356Homeobox domain
SMARTSM003891.4E-1576143IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-1876143IPR009057Homeodomain-like
SuperFamilySSF466896.42E-2076146IPR009057Homeodomain-like
CDDcd000863.08E-1578140No hitNo description
PfamPF000465.6E-2078138IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MEQDEGNNTN GGGMFVKVMT DEQMEVLRKQ IAIYATICEQ LVDLHKSLTS HHDLSGVRLG  60
NLYNDPLVTS GGHKFSGRQR WTPTPVQLQI LERLFEQGNG TPSKQKIKEI TSELSQHGQI  120
SETNVYNWFQ NRRARSKRKQ QVSSAPNNNN GESEVETEVE SPKPQQQQQQ HSASTADDNM  180
NMCFQNNPNV SSSVDQRSKK VEPVFPSDAT SKAAANHVGQ MSYYGTMLAN PRMDRIIGKM  240
EVPVPGNYQS YMQAHTQGDE YNMN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131139RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023770239.10.0WUSCHEL-related homeobox 8-like isoform X3
SwissprotQ5QMM31e-80WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A2J6KZM90.0A0A2J6KZM9_LACSA; Uncharacterized protein
STRINGSolyc02g082670.2.11e-113(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.12e-73WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]