PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa014287

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NAC

Protein Properties

Length: 189aa MW: 22032.5 Da PI: 4.561

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58676978	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	121.4	7.8e-38	9	128	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrF Ptdeelvv++L++k++ +++ ++i+++d+y ++PwdL+ k+ e k+wyfFs+r+ +nr+t++gyWk+ g d++++s+ +++ Lsa014287 9 LPPGFRFCPTDEELVVHFLQRKASLLPFHP-DIIPDLDLYPYDPWDLDGKAMVEGKKWYFFSRRS--------QNRVTANGYWKSCGGDEQIVSSnGSKR 99 79***********************999.99**********977777899**985........589************99867778 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kk vf g+ap+g kt+W+m+e+r+ Lsa014287 100 IGMKKYYVFNLGEAPEGIKTNWIMQEFRV 128 *************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-50	7	153	IPR003441	NAC domain
PROSITE profile	PS51005	47.666	9	155	IPR003441	NAC domain
Pfam	PF02365	7.7E-24	10	128	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MGDNRNVSLP PGFRFCPTDE ELVVHFLQRK ASLLPFHPDI IPDLDLYPYD PWDLDGKAMV 60 EGKKWYFFSR RSQNRVTANG YWKSCGGDEQ IVSSNGSKRI GMKKYYVFNL GEAPEGIKTN 120 WIMQEFRVSD GANSSRSRRR DNSKMDWVIC RVYEHDYDND DHDDDGMELS CLDEVFLSLD 180 DYDEISYPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-44	6	156	14	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-44	6	156	14	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-44	6	156	14	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-44	6	156	14	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-44	6	156	17	169	NAC domain-containing protein 19
3swm_B	1e-44	6	156	17	169	NAC domain-containing protein 19
3swm_C	1e-44	6	156	17	169	NAC domain-containing protein 19
3swm_D	1e-44	6	156	17	169	NAC domain-containing protein 19
3swp_A	1e-44	6	156	17	169	NAC domain-containing protein 19
3swp_B	1e-44	6	156	17	169	NAC domain-containing protein 19
3swp_C	1e-44	6	156	17	169	NAC domain-containing protein 19
3swp_D	1e-44	6	156	17	169	NAC domain-containing protein 19
4dul_A	1e-44	6	156	14	166	NAC domain-containing protein 19
4dul_B	1e-44	6	156	14	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023755853.1	1e-140	NAC domain-containing protein 104-like
Swissprot	Q8GWK6	5e-73	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A2J6LW54	1e-138	A0A2J6LW54_LACSA; Uncharacterized protein
STRING	GLYMA08G08010.1	4e-87	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	5e-55	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]