PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa014290

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MYB_related

Protein Properties

Length: 1036aa MW: 116290 Da PI: 9.27

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-31303	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25	4.3e-08	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE + +++a +++G + W+++a+ + +R+ +++ Lsa014290 46 HWSKEELDHFYEAYRKHGRD-WRKVASALR-NRSVEMV 81 5***************77.*****.98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.21E-10	42	91	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-4	43	91	IPR001005	SANT/Myb domain
Pfam	PF00249	3.7E-7	46	81	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.2E-5	46	81	IPR009057	Homeodomain-like
CDD	cd00167	3.44E-5	47	81	No hit	No description
SMART	SM01135	1.2E-51	574	675	IPR033471	DIRP domain
Pfam	PF06584	1.1E-29	574	673	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1036 aa Download sequence Send to blast
MGPAKKSRSV NKRFSYGNEI PPTKDGDNTY KKNQRKKKLS DMLGPHWSKE ELDHFYEAYR 60 KHGRDWRKVA SALRNRSVEM VEAVYSLNKA YLSLPEGTAS VAGFIAMMTD YYSNMEDRDS 120 EQEKNDGVGT SRKPQKRLQR KVPETIPKGS VDRIHLHPGA VLSDYGCMSL TKKKRSGGSK 180 PRVVGKRTPR FPVSHSHEYV KGEKSFLPTR KGIIKPKADD DEDVAHSIAM ALAEASKKGS 240 SPNRRASSLM SSPSHSAERM YDESDVGSGY GEDIEGSMEA DNTDFPRDKS KERINAGYVL 300 HDRKGSQGKK VRVDKKENKH LDYIREACSG TEGHNLSTLR RNFEFSDAKP SKSSQGSKKR 360 SKGAHTGRDE NSAFDALETL ANLSLMILPE ANGNGKDELV EDSHLLLSIP TSTSRQGEKR 420 KSSVPKRSRS ISTLEASDNK AQTSGKDSVD DTNIASEAKE SHHLITKVSR KRQKIVAPKI 480 PKSEAAIHTT GKESLESEAA ESKSIPQLAK NDKHTPSSID TRKEVDICTK VRSKHKLFKP 540 DTLFEAVGKD KPREELSNCL SNKLMRRWCA CEFFYSAIDD PWFAKQEFVE YLYHVGLGHV 600 PRLTRVEWGV IRSSLGKPRR FSINFLKEEK EKLNQYQDSV RTHYTELRSG SRDGLPTDLA 660 RPLSVGQRVV AIYPKTREIH DGTVLTVDHD HHRCRIQFDR PELGVEQIMD TDCMPLNPFE 720 NMPASLMRQT PVGKFLESLN EVKIKDQRLE GYTNTKSTSR EQLENMYDAA SIKSNLLSRN 780 HHGTHSAQFH AKEADVEAIA ELNRALDKKE AVVFELRRMN DDVLENQTDG EFALQESDAF 840 KKQYAAVLVQ LNEANAQVSS ALFRLRQRNT YQGNFLLTTL PKTVATEDSK CQVNEIVEIS 900 RTKARTMVDI AIQAISSLKL DPTVEIDKAV DYVNDRLPLD DSFVTVKGPD SKSTKSNPCD 960 LNKASVPSEL ITQCVATLFI IQKCTEREFP PAEVASILDS AVSSLQPWSP QNLQVYAEIQ 1020 KCMGIIKNQI LALVPT

Sequence ? help Back to Top

Protein Sequence Length: 1036 aa Download sequence Send to blast

MGPAKKSRSV NKRFSYGNEI PPTKDGDNTY KKNQRKKKLS DMLGPHWSKE ELDHFYEAYR  60
KHGRDWRKVA SALRNRSVEM VEAVYSLNKA YLSLPEGTAS VAGFIAMMTD YYSNMEDRDS  120
EQEKNDGVGT SRKPQKRLQR KVPETIPKGS VDRIHLHPGA VLSDYGCMSL TKKKRSGGSK  180
PRVVGKRTPR FPVSHSHEYV KGEKSFLPTR KGIIKPKADD DEDVAHSIAM ALAEASKKGS  240
SPNRRASSLM SSPSHSAERM YDESDVGSGY GEDIEGSMEA DNTDFPRDKS KERINAGYVL  300
HDRKGSQGKK VRVDKKENKH LDYIREACSG TEGHNLSTLR RNFEFSDAKP SKSSQGSKKR  360
SKGAHTGRDE NSAFDALETL ANLSLMILPE ANGNGKDELV EDSHLLLSIP TSTSRQGEKR  420
KSSVPKRSRS ISTLEASDNK AQTSGKDSVD DTNIASEAKE SHHLITKVSR KRQKIVAPKI  480
PKSEAAIHTT GKESLESEAA ESKSIPQLAK NDKHTPSSID TRKEVDICTK VRSKHKLFKP  540
DTLFEAVGKD KPREELSNCL SNKLMRRWCA CEFFYSAIDD PWFAKQEFVE YLYHVGLGHV  600
PRLTRVEWGV IRSSLGKPRR FSINFLKEEK EKLNQYQDSV RTHYTELRSG SRDGLPTDLA  660
RPLSVGQRVV AIYPKTREIH DGTVLTVDHD HHRCRIQFDR PELGVEQIMD TDCMPLNPFE  720
NMPASLMRQT PVGKFLESLN EVKIKDQRLE GYTNTKSTSR EQLENMYDAA SIKSNLLSRN  780
HHGTHSAQFH AKEADVEAIA ELNRALDKKE AVVFELRRMN DDVLENQTDG EFALQESDAF  840
KKQYAAVLVQ LNEANAQVSS ALFRLRQRNT YQGNFLLTTL PKTVATEDSK CQVNEIVEIS  900
RTKARTMVDI AIQAISSLKL DPTVEIDKAV DYVNDRLPLD DSFVTVKGPD SKSTKSNPCD  960
LNKASVPSEL ITQCVATLFI IQKCTEREFP PAEVASILDS AVSSLQPWSP QNLQVYAEIQ  1020
KCMGIIKNQI LALVPT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023751665.1	0.0	protein ALWAYS EARLY 3 isoform X2
TrEMBL	A0A2J6M579	0.0	A0A2J6M579_LACSA; Uncharacterized protein
STRING	Migut.G00183.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-172	DNA binding