PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa014310

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

TCP

Protein Properties

Length: 289aa MW: 32608.3 Da PI: 7.8285

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58686001	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-49234	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	101.8	1.2e-31	47	155	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............. 88 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl ak++i+el+ ++ +s ++ ++ +s +++++s++ Lsa014310 47 FGGKDRHSKVCTVRGLRDRRVRLSVQTAIQLYDLQDRLGLNQPSKVVDWLLDVAKHEIDELPPLQMPSGNFGQNLQSMINVASHSENlesvrtntnglnw 146 689*************************************************************888886666666666666555555555445555555 PP TCP 89 ........k 89 + Lsa014310 147 edywnpdkS 155 555544331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	30.795	49	107	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.1E-30	49	156	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MNILNTRESD DEKSTNNGKN IIPNPNLTTS SWTKLRDPRI VRVSRAFGGK DRHSKVCTVR 60 GLRDRRVRLS VQTAIQLYDL QDRLGLNQPS KVVDWLLDVA KHEIDELPPL QMPSGNFGQN 120 LQSMINVASH SENLESVRTN TNGLNWEDYW NPDKSKENKD HFFVQSSTQS SSLPVVCNNV 180 VPNGSFLKLN PSNLSLSQFG SYGSMAHHQE NASDNFNHIA YPLPSHDHNV RYQFDPKQLT 240 FEMLSSSSSS SHQQPLSSSP LYTINQGMVR PLHLSMNPKL FPSEENGHS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	5e-19	54	108	1	55	Putative transcription factor PCF6
5zkt_B	5e-19	54	108	1	55	Putative transcription factor PCF6
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023770796.1	0.0	transcription factor TCP17-like
Refseq	XP_023770797.1	0.0	transcription factor TCP17-like
Refseq	XP_023770798.1	0.0	transcription factor TCP17-like
TrEMBL	A0A2J6KY95	0.0	A0A2J6KY95_LACSA; Uncharacterized protein
STRING	EOY03699	5e-67	(Theobroma cacao)
STRING	cassava4.1_010816m	5e-67	(Manihot esculenta)